Experiment: Rifampicin 0.0001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prkE and Synpcc7942_0601 are separated by 69 nucleotides Synpcc7942_0601 and Synpcc7942_0602 are separated by 455 nucleotides
Synpcc7942_0600: prkE - serine/threonine protein kinase, at 588,528 to 590,060
prkE
Synpcc7942_0601: Synpcc7942_0601 - hypothetical protein, at 590,130 to 590,390
_0601
Synpcc7942_0602: Synpcc7942_0602 - hypothetical protein, at 590,846 to 591,454
_0602
Position (kb) 590
591 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 589.140 kb on + strand, within prkE at 589.140 kb on + strand, within prkE at 589.140 kb on + strand, within prkE at 589.147 kb on + strand, within prkE at 589.148 kb on - strand, within prkE at 589.148 kb on - strand, within prkE at 589.173 kb on + strand, within prkE at 589.204 kb on - strand, within prkE at 589.204 kb on - strand, within prkE at 589.206 kb on + strand, within prkE at 589.207 kb on + strand, within prkE at 589.214 kb on - strand, within prkE at 589.214 kb on - strand, within prkE at 589.234 kb on + strand, within prkE at 589.242 kb on - strand, within prkE at 589.289 kb on - strand, within prkE at 589.300 kb on + strand, within prkE at 589.301 kb on + strand, within prkE at 589.301 kb on + strand at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.322 kb on + strand, within prkE at 589.347 kb on - strand, within prkE at 589.365 kb on + strand, within prkE at 589.371 kb on - strand, within prkE at 589.373 kb on - strand, within prkE at 589.382 kb on - strand, within prkE at 589.412 kb on + strand, within prkE at 589.430 kb on + strand, within prkE at 589.430 kb on + strand, within prkE at 589.430 kb on + strand, within prkE at 589.430 kb on + strand, within prkE at 589.438 kb on - strand, within prkE at 589.438 kb on - strand, within prkE at 589.438 kb on - strand, within prkE at 589.440 kb on + strand, within prkE at 589.440 kb on + strand, within prkE at 589.445 kb on - strand, within prkE at 589.446 kb on - strand, within prkE at 589.455 kb on + strand, within prkE at 589.476 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.481 kb on + strand, within prkE at 589.484 kb on + strand, within prkE at 589.489 kb on - strand, within prkE at 589.489 kb on - strand, within prkE at 589.489 kb on - strand, within prkE at 589.489 kb on - strand, within prkE at 589.489 kb on - strand, within prkE at 589.494 kb on - strand, within prkE at 589.500 kb on - strand, within prkE at 589.532 kb on + strand, within prkE at 589.538 kb on + strand, within prkE at 589.546 kb on - strand, within prkE at 589.548 kb on + strand, within prkE at 589.548 kb on + strand, within prkE at 589.588 kb on + strand, within prkE at 589.619 kb on - strand, within prkE at 589.641 kb on - strand, within prkE at 589.673 kb on - strand, within prkE at 589.676 kb on + strand, within prkE at 589.676 kb on + strand, within prkE at 589.676 kb on + strand, within prkE at 589.678 kb on + strand, within prkE at 589.684 kb on - strand, within prkE at 589.742 kb on + strand, within prkE at 589.758 kb on - strand, within prkE at 589.789 kb on - strand, within prkE at 589.793 kb on + strand, within prkE at 589.809 kb on + strand, within prkE at 589.810 kb on - strand, within prkE at 589.815 kb on - strand, within prkE at 589.815 kb on - strand, within prkE at 589.816 kb on + strand, within prkE at 589.842 kb on + strand, within prkE at 589.845 kb on - strand, within prkE at 589.849 kb on - strand, within prkE at 589.856 kb on + strand, within prkE at 589.863 kb on + strand, within prkE at 589.880 kb on - strand, within prkE at 589.915 kb on + strand at 589.962 kb on + strand at 589.962 kb on + strand at 589.977 kb on + strand at 589.985 kb on - strand at 589.993 kb on - strand at 590.001 kb on + strand at 590.008 kb on - strand at 590.011 kb on + strand at 590.021 kb on + strand at 590.048 kb on + strand at 590.056 kb on + strand at 590.058 kb on + strand at 590.068 kb on + strand at 590.068 kb on + strand at 590.071 kb on - strand at 590.076 kb on - strand at 590.076 kb on - strand at 590.081 kb on - strand at 590.101 kb on + strand at 590.147 kb on - strand at 590.153 kb on + strand at 590.161 kb on - strand, within Synpcc7942_0601 at 590.182 kb on - strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.236 kb on + strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.254 kb on + strand, within Synpcc7942_0601 at 590.254 kb on + strand, within Synpcc7942_0601 at 590.299 kb on - strand, within Synpcc7942_0601 at 590.371 kb on + strand at 590.402 kb on - strand at 590.402 kb on - strand at 590.446 kb on + strand at 590.562 kb on + strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.598 kb on + strand at 590.828 kb on + strand at 590.865 kb on + strand at 590.902 kb on + strand at 590.974 kb on + strand, within Synpcc7942_0602 at 591.002 kb on + strand, within Synpcc7942_0602 at 591.002 kb on - strand, within Synpcc7942_0602 at 591.004 kb on + strand, within Synpcc7942_0602 at 591.010 kb on - strand, within Synpcc7942_0602 at 591.012 kb on - strand, within Synpcc7942_0602 at 591.170 kb on + strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.303 kb on - strand, within Synpcc7942_0602 at 591.308 kb on - strand, within Synpcc7942_0602 at 591.382 kb on + strand, within Synpcc7942_0602 at 591.390 kb on - strand, within Synpcc7942_0602
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0001953125 mg/ml remove 589,140 + prkE Synpcc7942_0600 0.40 -0.1 589,140 + prkE Synpcc7942_0600 0.40 -0.1 589,140 + prkE Synpcc7942_0600 0.40 +0.9 589,147 + prkE Synpcc7942_0600 0.40 -2.0 589,148 - prkE Synpcc7942_0600 0.40 -0.1 589,148 - prkE Synpcc7942_0600 0.40 -1.8 589,173 + prkE Synpcc7942_0600 0.42 -0.7 589,204 - prkE Synpcc7942_0600 0.44 -1.5 589,204 - prkE Synpcc7942_0600 0.44 -2.1 589,206 + prkE Synpcc7942_0600 0.44 -0.6 589,207 + prkE Synpcc7942_0600 0.44 -1.1 589,214 - prkE Synpcc7942_0600 0.45 -0.1 589,214 - prkE Synpcc7942_0600 0.45 -0.7 589,234 + prkE Synpcc7942_0600 0.46 -0.7 589,242 - prkE Synpcc7942_0600 0.47 -3.4 589,289 - prkE Synpcc7942_0600 0.50 +0.4 589,300 + prkE Synpcc7942_0600 0.50 +0.5 589,301 + prkE Synpcc7942_0600 0.50 -0.4 589,301 + -1.1 589,309 - prkE Synpcc7942_0600 0.51 +1.1 589,309 - prkE Synpcc7942_0600 0.51 -1.0 589,309 - prkE Synpcc7942_0600 0.51 +0.8 589,309 - prkE Synpcc7942_0600 0.51 +0.5 589,322 + prkE Synpcc7942_0600 0.52 -0.1 589,347 - prkE Synpcc7942_0600 0.53 -0.3 589,365 + prkE Synpcc7942_0600 0.55 -1.3 589,371 - prkE Synpcc7942_0600 0.55 -0.7 589,373 - prkE Synpcc7942_0600 0.55 -0.1 589,382 - prkE Synpcc7942_0600 0.56 +0.9 589,412 + prkE Synpcc7942_0600 0.58 -0.5 589,430 + prkE Synpcc7942_0600 0.59 +0.7 589,430 + prkE Synpcc7942_0600 0.59 -0.7 589,430 + prkE Synpcc7942_0600 0.59 -0.9 589,430 + prkE Synpcc7942_0600 0.59 -0.3 589,438 - prkE Synpcc7942_0600 0.59 +0.2 589,438 - prkE Synpcc7942_0600 0.59 +0.2 589,438 - prkE Synpcc7942_0600 0.59 -0.3 589,440 + prkE Synpcc7942_0600 0.59 +2.2 589,440 + prkE Synpcc7942_0600 0.59 +0.2 589,445 - prkE Synpcc7942_0600 0.60 +0.7 589,446 - prkE Synpcc7942_0600 0.60 +1.9 589,455 + prkE Synpcc7942_0600 0.60 -1.0 589,476 + prkE Synpcc7942_0600 0.62 +1.2 589,481 + prkE Synpcc7942_0600 0.62 -1.7 589,481 + prkE Synpcc7942_0600 0.62 -2.7 589,481 + prkE Synpcc7942_0600 0.62 -1.4 589,481 + prkE Synpcc7942_0600 0.62 -1.1 589,481 + prkE Synpcc7942_0600 0.62 -0.9 589,481 + prkE Synpcc7942_0600 0.62 +0.2 589,481 + prkE Synpcc7942_0600 0.62 -0.8 589,481 + prkE Synpcc7942_0600 0.62 -0.1 589,481 + prkE Synpcc7942_0600 0.62 -0.1 589,481 + prkE Synpcc7942_0600 0.62 +0.4 589,481 + prkE Synpcc7942_0600 0.62 -1.1 589,484 + prkE Synpcc7942_0600 0.62 -3.4 589,489 - prkE Synpcc7942_0600 0.63 +1.9 589,489 - prkE Synpcc7942_0600 0.63 +0.1 589,489 - prkE Synpcc7942_0600 0.63 -0.1 589,489 - prkE Synpcc7942_0600 0.63 +0.1 589,489 - prkE Synpcc7942_0600 0.63 -0.5 589,494 - prkE Synpcc7942_0600 0.63 +0.3 589,500 - prkE Synpcc7942_0600 0.63 +1.3 589,532 + prkE Synpcc7942_0600 0.65 +0.0 589,538 + prkE Synpcc7942_0600 0.66 -0.6 589,546 - prkE Synpcc7942_0600 0.66 -1.6 589,548 + prkE Synpcc7942_0600 0.67 +1.5 589,548 + prkE Synpcc7942_0600 0.67 -2.1 589,588 + prkE Synpcc7942_0600 0.69 +0.1 589,619 - prkE Synpcc7942_0600 0.71 +0.9 589,641 - prkE Synpcc7942_0600 0.73 -1.1 589,673 - prkE Synpcc7942_0600 0.75 -2.3 589,676 + prkE Synpcc7942_0600 0.75 -1.4 589,676 + prkE Synpcc7942_0600 0.75 -1.9 589,676 + prkE Synpcc7942_0600 0.75 +0.2 589,678 + prkE Synpcc7942_0600 0.75 +0.5 589,684 - prkE Synpcc7942_0600 0.75 -0.7 589,742 + prkE Synpcc7942_0600 0.79 +0.9 589,758 - prkE Synpcc7942_0600 0.80 -0.3 589,789 - prkE Synpcc7942_0600 0.82 -0.5 589,793 + prkE Synpcc7942_0600 0.83 -0.1 589,809 + prkE Synpcc7942_0600 0.84 -2.7 589,810 - prkE Synpcc7942_0600 0.84 +0.3 589,815 - prkE Synpcc7942_0600 0.84 -0.7 589,815 - prkE Synpcc7942_0600 0.84 +0.0 589,816 + prkE Synpcc7942_0600 0.84 -1.1 589,842 + prkE Synpcc7942_0600 0.86 -1.5 589,845 - prkE Synpcc7942_0600 0.86 +0.7 589,849 - prkE Synpcc7942_0600 0.86 +0.1 589,856 + prkE Synpcc7942_0600 0.87 +1.0 589,863 + prkE Synpcc7942_0600 0.87 +1.2 589,880 - prkE Synpcc7942_0600 0.88 +1.5 589,915 + -2.4 589,962 + +2.2 589,962 + +1.1 589,977 + -2.1 589,985 - -1.1 589,993 - -0.8 590,001 + +0.1 590,008 - -2.7 590,011 + -0.2 590,021 + -1.2 590,048 + +0.2 590,056 + -0.1 590,058 + +1.1 590,068 + -2.9 590,068 + -1.4 590,071 - -1.9 590,076 - +1.6 590,076 - +1.7 590,081 - -1.5 590,101 + -1.4 590,147 - +0.3 590,153 + +1.5 590,161 - Synpcc7942_0601 0.12 +1.4 590,182 - Synpcc7942_0601 0.20 -2.4 590,228 + Synpcc7942_0601 0.38 +0.7 590,228 + Synpcc7942_0601 0.38 -3.1 590,228 + Synpcc7942_0601 0.38 -0.1 590,236 + Synpcc7942_0601 0.41 -1.7 590,236 - Synpcc7942_0601 0.41 -2.4 590,236 - Synpcc7942_0601 0.41 +1.2 590,236 - Synpcc7942_0601 0.41 -1.7 590,254 + Synpcc7942_0601 0.48 +1.7 590,254 + Synpcc7942_0601 0.48 -1.3 590,299 - Synpcc7942_0601 0.65 -0.3 590,371 + -0.1 590,402 - +2.4 590,402 - +0.5 590,446 + -0.1 590,562 + +2.2 590,569 - -1.1 590,569 - +0.9 590,569 - +1.2 590,598 + +0.5 590,828 + +0.9 590,865 + -4.3 590,902 + -2.1 590,974 + Synpcc7942_0602 0.21 -2.4 591,002 + Synpcc7942_0602 0.26 -1.7 591,002 - Synpcc7942_0602 0.26 -0.7 591,004 + Synpcc7942_0602 0.26 -3.5 591,010 - Synpcc7942_0602 0.27 -4.7 591,012 - Synpcc7942_0602 0.27 -4.1 591,170 + Synpcc7942_0602 0.53 -1.7 591,281 - Synpcc7942_0602 0.71 -3.4 591,281 - Synpcc7942_0602 0.71 -2.1 591,299 - Synpcc7942_0602 0.74 -2.1 591,299 - Synpcc7942_0602 0.74 -1.2 591,303 - Synpcc7942_0602 0.75 -2.7 591,308 - Synpcc7942_0602 0.76 -3.3 591,382 + Synpcc7942_0602 0.88 -2.7 591,390 - Synpcc7942_0602 0.89 -2.9
Or see this region's nucleotide sequence