Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0500

Experiment: Rifampicin 0.0001953125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0499 and Synpcc7942_0500 are separated by 99 nucleotidesSynpcc7942_0500 and Synpcc7942_0501 are separated by 9 nucleotidesSynpcc7942_0501 and Synpcc7942_0502 are separated by 24 nucleotides Synpcc7942_0499: Synpcc7942_0499 - hydroxyneurosporene-O-methyltransferase, at 487,375 to 488,370 _0499 Synpcc7942_0500: Synpcc7942_0500 - hypothetical protein, at 488,470 to 488,823 _0500 Synpcc7942_0501: Synpcc7942_0501 - Nucleoside-diphosphate-sugar epimerase-like, at 488,833 to 489,483 _0501 Synpcc7942_0502: Synpcc7942_0502 - hypothetical protein, at 489,508 to 490,074 _0502 Position (kb) 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 487.500 kb on - strand, within Synpcc7942_0499at 487.534 kb on - strand, within Synpcc7942_0499at 487.544 kb on - strand, within Synpcc7942_0499at 487.568 kb on - strand, within Synpcc7942_0499at 487.575 kb on + strand, within Synpcc7942_0499at 487.596 kb on + strand, within Synpcc7942_0499at 487.640 kb on - strand, within Synpcc7942_0499at 487.651 kb on - strand, within Synpcc7942_0499at 487.677 kb on + strand, within Synpcc7942_0499at 487.697 kb on + strand, within Synpcc7942_0499at 487.712 kb on + strand, within Synpcc7942_0499at 487.722 kb on + strand, within Synpcc7942_0499at 487.742 kb on - strand, within Synpcc7942_0499at 487.743 kb on - strand, within Synpcc7942_0499at 487.803 kb on + strand, within Synpcc7942_0499at 487.812 kb on - strand, within Synpcc7942_0499at 487.902 kb on - strand, within Synpcc7942_0499at 487.902 kb on - strand, within Synpcc7942_0499at 487.914 kb on - strand, within Synpcc7942_0499at 487.918 kb on - strand, within Synpcc7942_0499at 487.925 kb on - strand, within Synpcc7942_0499at 487.929 kb on - strand, within Synpcc7942_0499at 487.966 kb on + strand, within Synpcc7942_0499at 487.969 kb on - strand, within Synpcc7942_0499at 487.989 kb on - strand, within Synpcc7942_0499at 487.997 kb on + strand, within Synpcc7942_0499at 487.997 kb on - strand, within Synpcc7942_0499at 488.005 kb on - strand, within Synpcc7942_0499at 488.005 kb on - strand, within Synpcc7942_0499at 488.044 kb on - strand, within Synpcc7942_0499at 488.060 kb on + strand, within Synpcc7942_0499at 488.065 kb on - strand, within Synpcc7942_0499at 488.067 kb on + strand, within Synpcc7942_0499at 488.081 kb on + strand, within Synpcc7942_0499at 488.101 kb on + strand, within Synpcc7942_0499at 488.102 kb on + strand, within Synpcc7942_0499at 488.102 kb on + strand, within Synpcc7942_0499at 488.102 kb on + strand, within Synpcc7942_0499at 488.107 kb on + strand, within Synpcc7942_0499at 488.110 kb on - strand, within Synpcc7942_0499at 488.116 kb on - strand, within Synpcc7942_0499at 488.127 kb on + strand, within Synpcc7942_0499at 488.135 kb on - strand, within Synpcc7942_0499at 488.146 kb on - strand, within Synpcc7942_0499at 488.146 kb on - strand, within Synpcc7942_0499at 488.152 kb on - strand, within Synpcc7942_0499at 488.159 kb on + strand, within Synpcc7942_0499at 488.167 kb on - strand, within Synpcc7942_0499at 488.167 kb on - strand, within Synpcc7942_0499at 488.188 kb on + strandat 488.196 kb on - strand, within Synpcc7942_0499at 488.196 kb on - strand, within Synpcc7942_0499at 488.207 kb on + strand, within Synpcc7942_0499at 488.209 kb on + strand, within Synpcc7942_0499at 488.210 kb on - strand, within Synpcc7942_0499at 488.217 kb on - strand, within Synpcc7942_0499at 488.217 kb on - strand, within Synpcc7942_0499at 488.231 kb on + strand, within Synpcc7942_0499at 488.250 kb on - strand, within Synpcc7942_0499at 488.258 kb on - strand, within Synpcc7942_0499at 488.269 kb on + strand, within Synpcc7942_0499at 488.290 kb on + strandat 488.303 kb on + strandat 488.305 kb on + strandat 488.305 kb on + strandat 488.305 kb on + strandat 488.311 kb on - strandat 488.313 kb on - strandat 488.331 kb on + strandat 488.332 kb on + strandat 488.334 kb on - strandat 488.348 kb on + strandat 488.401 kb on + strandat 488.408 kb on + strandat 488.416 kb on - strandat 488.416 kb on - strandat 488.416 kb on - strandat 488.454 kb on + strandat 488.454 kb on + strandat 488.454 kb on + strandat 488.454 kb on + strandat 488.454 kb on + strandat 488.454 kb on + strandat 488.462 kb on - strandat 488.462 kb on - strandat 488.468 kb on + strandat 488.502 kb on + strandat 488.541 kb on - strand, within Synpcc7942_0500at 488.543 kb on + strand, within Synpcc7942_0500at 488.547 kb on - strand, within Synpcc7942_0500at 488.549 kb on + strand, within Synpcc7942_0500at 488.551 kb on - strand, within Synpcc7942_0500at 488.551 kb on - strand, within Synpcc7942_0500at 488.565 kb on + strand, within Synpcc7942_0500at 488.573 kb on - strand, within Synpcc7942_0500at 488.579 kb on - strand, within Synpcc7942_0500at 488.624 kb on - strand, within Synpcc7942_0500at 488.629 kb on - strand, within Synpcc7942_0500at 488.652 kb on + strand, within Synpcc7942_0500at 488.660 kb on - strand, within Synpcc7942_0500at 488.700 kb on + strand, within Synpcc7942_0500at 488.700 kb on + strand, within Synpcc7942_0500at 488.706 kb on + strand, within Synpcc7942_0500at 488.711 kb on + strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.717 kb on + strand, within Synpcc7942_0500at 488.719 kb on - strand, within Synpcc7942_0500at 488.745 kb on + strand, within Synpcc7942_0500at 488.745 kb on + strand, within Synpcc7942_0500at 488.745 kb on + strand, within Synpcc7942_0500at 488.745 kb on + strand, within Synpcc7942_0500at 488.753 kb on - strand, within Synpcc7942_0500at 488.753 kb on - strand, within Synpcc7942_0500at 488.753 kb on - strand, within Synpcc7942_0500at 488.753 kb on - strand, within Synpcc7942_0500at 488.759 kb on - strand, within Synpcc7942_0500at 488.764 kb on + strand, within Synpcc7942_0500at 488.772 kb on - strand, within Synpcc7942_0500at 488.800 kb on + strandat 488.813 kb on + strandat 488.837 kb on + strandat 488.845 kb on - strandat 488.845 kb on - strandat 488.845 kb on - strandat 488.855 kb on - strandat 488.871 kb on + strandat 488.871 kb on + strandat 488.879 kb on - strandat 488.879 kb on - strandat 488.935 kb on - strand, within Synpcc7942_0501at 488.948 kb on + strand, within Synpcc7942_0501at 489.030 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.058 kb on - strand, within Synpcc7942_0501at 489.058 kb on - strand, within Synpcc7942_0501at 489.058 kb on - strand, within Synpcc7942_0501at 489.076 kb on + strand, within Synpcc7942_0501at 489.077 kb on - strand, within Synpcc7942_0501at 489.094 kb on - strand, within Synpcc7942_0501at 489.095 kb on + strand, within Synpcc7942_0501at 489.103 kb on - strand, within Synpcc7942_0501at 489.105 kb on + strand, within Synpcc7942_0501at 489.105 kb on + strand, within Synpcc7942_0501at 489.105 kb on + strand, within Synpcc7942_0501at 489.110 kb on + strand, within Synpcc7942_0501at 489.110 kb on + strand, within Synpcc7942_0501at 489.113 kb on - strand, within Synpcc7942_0501at 489.120 kb on + strand, within Synpcc7942_0501at 489.141 kb on + strand, within Synpcc7942_0501at 489.160 kb on + strand, within Synpcc7942_0501at 489.163 kb on - strand, within Synpcc7942_0501at 489.168 kb on - strand, within Synpcc7942_0501at 489.168 kb on - strand, within Synpcc7942_0501at 489.168 kb on - strand, within Synpcc7942_0501at 489.183 kb on + strand, within Synpcc7942_0501at 489.201 kb on - strandat 489.202 kb on + strand, within Synpcc7942_0501at 489.218 kb on - strand, within Synpcc7942_0501at 489.230 kb on + strand, within Synpcc7942_0501at 489.230 kb on + strand, within Synpcc7942_0501at 489.230 kb on + strand, within Synpcc7942_0501at 489.265 kb on + strand, within Synpcc7942_0501at 489.269 kb on - strand, within Synpcc7942_0501at 489.289 kb on + strand, within Synpcc7942_0501at 489.289 kb on + strand, within Synpcc7942_0501at 489.318 kb on - strand, within Synpcc7942_0501at 489.348 kb on + strand, within Synpcc7942_0501at 489.362 kb on + strand, within Synpcc7942_0501at 489.378 kb on + strandat 489.401 kb on + strand, within Synpcc7942_0501at 489.439 kb on + strandat 489.514 kb on - strandat 489.516 kb on - strandat 489.550 kb on + strandat 489.563 kb on - strandat 489.566 kb on - strand, within Synpcc7942_0502at 489.605 kb on - strand, within Synpcc7942_0502at 489.605 kb on - strand, within Synpcc7942_0502at 489.616 kb on + strand, within Synpcc7942_0502at 489.621 kb on + strand, within Synpcc7942_0502at 489.624 kb on - strand, within Synpcc7942_0502at 489.629 kb on - strand, within Synpcc7942_0502at 489.629 kb on - strand, within Synpcc7942_0502at 489.629 kb on - strand, within Synpcc7942_0502at 489.629 kb on - strand, within Synpcc7942_0502at 489.689 kb on + strand, within Synpcc7942_0502at 489.689 kb on + strand, within Synpcc7942_0502at 489.697 kb on - strand, within Synpcc7942_0502at 489.697 kb on - strand, within Synpcc7942_0502at 489.697 kb on - strandat 489.704 kb on + strand, within Synpcc7942_0502at 489.707 kb on - strand, within Synpcc7942_0502at 489.755 kb on + strand, within Synpcc7942_0502at 489.755 kb on + strand, within Synpcc7942_0502at 489.763 kb on - strand, within Synpcc7942_0502at 489.763 kb on - strand, within Synpcc7942_0502at 489.763 kb on - strand, within Synpcc7942_0502at 489.802 kb on - strand, within Synpcc7942_0502at 489.804 kb on - strand, within Synpcc7942_0502at 489.814 kb on - strand, within Synpcc7942_0502at 489.814 kb on - strand, within Synpcc7942_0502at 489.821 kb on + strand, within Synpcc7942_0502at 489.821 kb on + strand, within Synpcc7942_0502

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0001953125 mg/ml
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487,500 - Synpcc7942_0499 0.13 -0.7
487,534 - Synpcc7942_0499 0.16 -0.0
487,544 - Synpcc7942_0499 0.17 -2.8
487,568 - Synpcc7942_0499 0.19 -1.0
487,575 + Synpcc7942_0499 0.20 +2.1
487,596 + Synpcc7942_0499 0.22 +1.0
487,640 - Synpcc7942_0499 0.27 +0.9
487,651 - Synpcc7942_0499 0.28 +0.9
487,677 + Synpcc7942_0499 0.30 -3.5
487,697 + Synpcc7942_0499 0.32 +0.5
487,712 + Synpcc7942_0499 0.34 -0.6
487,722 + Synpcc7942_0499 0.35 +0.9
487,742 - Synpcc7942_0499 0.37 -1.1
487,743 - Synpcc7942_0499 0.37 +0.6
487,803 + Synpcc7942_0499 0.43 -1.6
487,812 - Synpcc7942_0499 0.44 -2.0
487,902 - Synpcc7942_0499 0.53 -2.6
487,902 - Synpcc7942_0499 0.53 -0.3
487,914 - Synpcc7942_0499 0.54 -0.5
487,918 - Synpcc7942_0499 0.55 -0.0
487,925 - Synpcc7942_0499 0.55 +1.3
487,929 - Synpcc7942_0499 0.56 -0.0
487,966 + Synpcc7942_0499 0.59 +0.6
487,969 - Synpcc7942_0499 0.60 +0.1
487,989 - Synpcc7942_0499 0.62 -0.8
487,997 + Synpcc7942_0499 0.62 -2.3
487,997 - Synpcc7942_0499 0.62 +1.8
488,005 - Synpcc7942_0499 0.63 -1.0
488,005 - Synpcc7942_0499 0.63 +0.2
488,044 - Synpcc7942_0499 0.67 +0.9
488,060 + Synpcc7942_0499 0.69 +1.1
488,065 - Synpcc7942_0499 0.69 -1.1
488,067 + Synpcc7942_0499 0.69 +0.5
488,081 + Synpcc7942_0499 0.71 +1.3
488,101 + Synpcc7942_0499 0.73 -0.0
488,102 + Synpcc7942_0499 0.73 +0.8
488,102 + Synpcc7942_0499 0.73 +0.7
488,102 + Synpcc7942_0499 0.73 +0.7
488,107 + Synpcc7942_0499 0.73 -0.0
488,110 - Synpcc7942_0499 0.74 -1.6
488,116 - Synpcc7942_0499 0.74 +0.5
488,127 + Synpcc7942_0499 0.76 -1.3
488,135 - Synpcc7942_0499 0.76 -0.3
488,146 - Synpcc7942_0499 0.77 +1.5
488,146 - Synpcc7942_0499 0.77 +1.2
488,152 - Synpcc7942_0499 0.78 -0.0
488,159 + Synpcc7942_0499 0.79 -0.5
488,167 - Synpcc7942_0499 0.80 +0.3
488,167 - Synpcc7942_0499 0.80 +0.7
488,188 + -1.0
488,196 - Synpcc7942_0499 0.82 +2.0
488,196 - Synpcc7942_0499 0.82 +1.2
488,207 + Synpcc7942_0499 0.84 +0.3
488,209 + Synpcc7942_0499 0.84 -0.9
488,210 - Synpcc7942_0499 0.84 -3.2
488,217 - Synpcc7942_0499 0.85 +0.4
488,217 - Synpcc7942_0499 0.85 -0.0
488,231 + Synpcc7942_0499 0.86 +0.7
488,250 - Synpcc7942_0499 0.88 -0.0
488,258 - Synpcc7942_0499 0.89 +0.3
488,269 + Synpcc7942_0499 0.90 +0.6
488,290 + +0.8
488,303 + -0.2
488,305 + -2.0
488,305 + -0.6
488,305 + +1.6
488,311 - +0.8
488,313 - +0.3
488,331 + -0.7
488,332 + +0.5
488,334 - +0.8
488,348 + -0.6
488,401 + +2.5
488,408 + -1.4
488,416 - +0.6
488,416 - -1.3
488,416 - -1.2
488,454 + -1.8
488,454 + +0.1
488,454 + +0.4
488,454 + -0.2
488,454 + -3.2
488,454 + -1.6
488,462 - -2.3
488,462 - +0.7
488,468 + -0.3
488,502 + -1.0
488,541 - Synpcc7942_0500 0.20 -2.2
488,543 + Synpcc7942_0500 0.21 +1.3
488,547 - Synpcc7942_0500 0.22 +0.3
488,549 + Synpcc7942_0500 0.22 +0.8
488,551 - Synpcc7942_0500 0.23 +1.3
488,551 - Synpcc7942_0500 0.23 +0.8
488,565 + Synpcc7942_0500 0.27 +0.7
488,573 - Synpcc7942_0500 0.29 +0.6
488,579 - Synpcc7942_0500 0.31 -0.0
488,624 - Synpcc7942_0500 0.44 +1.2
488,629 - Synpcc7942_0500 0.45 +2.8
488,652 + Synpcc7942_0500 0.51 +2.5
488,660 - Synpcc7942_0500 0.54 -0.2
488,700 + Synpcc7942_0500 0.65 +0.7
488,700 + Synpcc7942_0500 0.65 +0.6
488,706 + Synpcc7942_0500 0.67 +1.6
488,711 + Synpcc7942_0500 0.68 +0.2
488,714 - Synpcc7942_0500 0.69 +0.6
488,714 - Synpcc7942_0500 0.69 +1.9
488,714 - Synpcc7942_0500 0.69 +0.7
488,714 - Synpcc7942_0500 0.69 -2.3
488,714 - Synpcc7942_0500 0.69 -2.6
488,714 - Synpcc7942_0500 0.69 +1.8
488,717 + Synpcc7942_0500 0.70 -0.3
488,719 - Synpcc7942_0500 0.70 -0.0
488,745 + Synpcc7942_0500 0.78 -2.4
488,745 + Synpcc7942_0500 0.78 -1.6
488,745 + Synpcc7942_0500 0.78 +2.1
488,745 + Synpcc7942_0500 0.78 +0.4
488,753 - Synpcc7942_0500 0.80 +0.7
488,753 - Synpcc7942_0500 0.80 -1.3
488,753 - Synpcc7942_0500 0.80 +2.3
488,753 - Synpcc7942_0500 0.80 +0.5
488,759 - Synpcc7942_0500 0.82 -0.7
488,764 + Synpcc7942_0500 0.83 +1.8
488,772 - Synpcc7942_0500 0.85 -1.6
488,800 + -0.0
488,813 + +0.8
488,837 + -0.0
488,845 - -0.0
488,845 - -1.0
488,845 - +0.6
488,855 - -0.2
488,871 + +0.5
488,871 + +1.3
488,879 - -2.5
488,879 - -1.1
488,935 - Synpcc7942_0501 0.16 -0.0
488,948 + Synpcc7942_0501 0.18 -2.0
489,030 + Synpcc7942_0501 0.30 -2.3
489,050 + Synpcc7942_0501 0.33 -0.0
489,050 + Synpcc7942_0501 0.33 -1.6
489,050 + Synpcc7942_0501 0.33 -1.9
489,050 + Synpcc7942_0501 0.33 -1.5
489,050 + Synpcc7942_0501 0.33 -1.0
489,050 + Synpcc7942_0501 0.33 -0.2
489,050 + Synpcc7942_0501 0.33 +0.3
489,050 + Synpcc7942_0501 0.33 -0.0
489,050 + Synpcc7942_0501 0.33 -2.3
489,058 - Synpcc7942_0501 0.35 -1.0
489,058 - Synpcc7942_0501 0.35 +1.4
489,058 - Synpcc7942_0501 0.35 -0.3
489,076 + Synpcc7942_0501 0.37 +1.0
489,077 - Synpcc7942_0501 0.37 +1.0
489,094 - Synpcc7942_0501 0.40 +1.6
489,095 + Synpcc7942_0501 0.40 -0.7
489,103 - Synpcc7942_0501 0.41 -0.0
489,105 + Synpcc7942_0501 0.42 +1.1
489,105 + Synpcc7942_0501 0.42 +1.3
489,105 + Synpcc7942_0501 0.42 -1.1
489,110 + Synpcc7942_0501 0.43 -0.0
489,110 + Synpcc7942_0501 0.43 +0.6
489,113 - Synpcc7942_0501 0.43 -2.8
489,120 + Synpcc7942_0501 0.44 +1.6
489,141 + Synpcc7942_0501 0.47 -0.2
489,160 + Synpcc7942_0501 0.50 +0.2
489,163 - Synpcc7942_0501 0.51 +0.2
489,168 - Synpcc7942_0501 0.51 -0.4
489,168 - Synpcc7942_0501 0.51 +2.9
489,168 - Synpcc7942_0501 0.51 +1.1
489,183 + Synpcc7942_0501 0.54 +0.4
489,201 - +2.0
489,202 + Synpcc7942_0501 0.57 +0.4
489,218 - Synpcc7942_0501 0.59 -2.0
489,230 + Synpcc7942_0501 0.61 -0.5
489,230 + Synpcc7942_0501 0.61 +0.5
489,230 + Synpcc7942_0501 0.61 -0.8
489,265 + Synpcc7942_0501 0.66 -0.3
489,269 - Synpcc7942_0501 0.67 -0.5
489,289 + Synpcc7942_0501 0.70 -0.0
489,289 + Synpcc7942_0501 0.70 +0.4
489,318 - Synpcc7942_0501 0.75 +1.3
489,348 + Synpcc7942_0501 0.79 +1.7
489,362 + Synpcc7942_0501 0.81 -1.6
489,378 + -0.0
489,401 + Synpcc7942_0501 0.87 -2.6
489,439 + -1.8
489,514 - +0.5
489,516 - +1.8
489,550 + -1.0
489,563 - +2.0
489,566 - Synpcc7942_0502 0.10 -2.2
489,605 - Synpcc7942_0502 0.17 -0.4
489,605 - Synpcc7942_0502 0.17 -0.6
489,616 + Synpcc7942_0502 0.19 +1.0
489,621 + Synpcc7942_0502 0.20 -0.0
489,624 - Synpcc7942_0502 0.20 -0.4
489,629 - Synpcc7942_0502 0.21 +0.3
489,629 - Synpcc7942_0502 0.21 +1.6
489,629 - Synpcc7942_0502 0.21 +2.9
489,629 - Synpcc7942_0502 0.21 -2.6
489,689 + Synpcc7942_0502 0.32 -2.0
489,689 + Synpcc7942_0502 0.32 -0.2
489,697 - Synpcc7942_0502 0.33 -1.6
489,697 - Synpcc7942_0502 0.33 +1.8
489,697 - -1.0
489,704 + Synpcc7942_0502 0.35 +1.5
489,707 - Synpcc7942_0502 0.35 -2.3
489,755 + Synpcc7942_0502 0.44 +0.8
489,755 + Synpcc7942_0502 0.44 -2.8
489,763 - Synpcc7942_0502 0.45 -1.0
489,763 - Synpcc7942_0502 0.45 +0.3
489,763 - Synpcc7942_0502 0.45 +0.5
489,802 - Synpcc7942_0502 0.52 +0.6
489,804 - Synpcc7942_0502 0.52 -0.7
489,814 - Synpcc7942_0502 0.54 -0.0
489,814 - Synpcc7942_0502 0.54 -0.9
489,821 + Synpcc7942_0502 0.55 +0.7
489,821 + Synpcc7942_0502 0.55 -2.0

Or see this region's nucleotide sequence