Experiment: Rifampicin 0.0001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0414 and Synpcc7942_0415 overlap by 21 nucleotides Synpcc7942_0415 and Synpcc7942_0416 are separated by 243 nucleotides Synpcc7942_0416 and Synpcc7942_0417 are separated by 78 nucleotides
Synpcc7942_0414: Synpcc7942_0414 - hypothetical protein, at 404,016 to 405,188
_0414
Synpcc7942_0415: Synpcc7942_0415 - hypothetical protein, at 405,168 to 406,145
_0415
Synpcc7942_0416: Synpcc7942_0416 - hypothetical protein, at 406,389 to 406,772
_0416
Synpcc7942_0417: Synpcc7942_0417 - ATPase, at 406,851 to 408,359
_0417
Position (kb) 405
406
407 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 404.186 kb on + strand, within Synpcc7942_0414 at 404.186 kb on + strand, within Synpcc7942_0414 at 404.193 kb on - strand, within Synpcc7942_0414 at 404.249 kb on + strand, within Synpcc7942_0414 at 404.253 kb on + strand, within Synpcc7942_0414 at 404.261 kb on + strand, within Synpcc7942_0414 at 404.261 kb on - strand, within Synpcc7942_0414 at 404.267 kb on - strand, within Synpcc7942_0414 at 404.317 kb on - strand, within Synpcc7942_0414 at 404.392 kb on + strand, within Synpcc7942_0414 at 404.443 kb on + strand, within Synpcc7942_0414 at 404.448 kb on + strand, within Synpcc7942_0414 at 404.451 kb on - strand, within Synpcc7942_0414 at 404.461 kb on - strand, within Synpcc7942_0414 at 404.511 kb on - strand, within Synpcc7942_0414 at 404.522 kb on + strand, within Synpcc7942_0414 at 404.522 kb on + strand, within Synpcc7942_0414 at 404.523 kb on + strand, within Synpcc7942_0414 at 404.523 kb on + strand, within Synpcc7942_0414 at 404.530 kb on - strand, within Synpcc7942_0414 at 404.531 kb on - strand, within Synpcc7942_0414 at 404.568 kb on + strand, within Synpcc7942_0414 at 404.568 kb on + strand, within Synpcc7942_0414 at 404.568 kb on + strand, within Synpcc7942_0414 at 404.576 kb on - strand, within Synpcc7942_0414 at 404.667 kb on - strand, within Synpcc7942_0414 at 404.691 kb on - strand, within Synpcc7942_0414 at 404.729 kb on + strand, within Synpcc7942_0414 at 404.734 kb on - strand, within Synpcc7942_0414 at 404.742 kb on - strand, within Synpcc7942_0414 at 404.742 kb on - strand, within Synpcc7942_0414 at 404.746 kb on + strand, within Synpcc7942_0414 at 404.769 kb on + strand, within Synpcc7942_0414 at 404.772 kb on - strand, within Synpcc7942_0414 at 404.772 kb on - strand, within Synpcc7942_0414 at 404.796 kb on - strand, within Synpcc7942_0414 at 404.800 kb on + strand, within Synpcc7942_0414 at 404.805 kb on + strand, within Synpcc7942_0414 at 404.823 kb on + strand, within Synpcc7942_0414 at 404.831 kb on - strand, within Synpcc7942_0414 at 404.860 kb on + strand, within Synpcc7942_0414 at 404.953 kb on + strand, within Synpcc7942_0414 at 404.953 kb on + strand, within Synpcc7942_0414 at 404.953 kb on + strand, within Synpcc7942_0414 at 404.954 kb on - strand, within Synpcc7942_0414 at 404.958 kb on + strand, within Synpcc7942_0414 at 404.961 kb on - strand, within Synpcc7942_0414 at 404.974 kb on - strand, within Synpcc7942_0414 at 404.976 kb on + strand, within Synpcc7942_0414 at 404.978 kb on + strand, within Synpcc7942_0414 at 405.019 kb on + strand, within Synpcc7942_0414 at 405.022 kb on - strand, within Synpcc7942_0414 at 405.027 kb on + strand, within Synpcc7942_0414 at 405.076 kb on - strand at 405.081 kb on + strand at 405.081 kb on + strand at 405.145 kb on + strand at 405.183 kb on + strand at 405.206 kb on + strand at 405.206 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.228 kb on - strand at 405.228 kb on - strand at 405.252 kb on + strand at 405.278 kb on + strand at 405.296 kb on - strand, within Synpcc7942_0415 at 405.323 kb on + strand, within Synpcc7942_0415 at 405.337 kb on + strand, within Synpcc7942_0415 at 405.353 kb on + strand, within Synpcc7942_0415 at 405.355 kb on - strand, within Synpcc7942_0415 at 405.368 kb on + strand, within Synpcc7942_0415 at 405.378 kb on + strand, within Synpcc7942_0415 at 405.391 kb on + strand, within Synpcc7942_0415 at 405.419 kb on + strand, within Synpcc7942_0415 at 405.419 kb on + strand, within Synpcc7942_0415 at 405.437 kb on + strand, within Synpcc7942_0415 at 405.438 kb on + strand, within Synpcc7942_0415 at 405.443 kb on + strand, within Synpcc7942_0415 at 405.443 kb on + strand, within Synpcc7942_0415 at 405.446 kb on - strand, within Synpcc7942_0415 at 405.473 kb on + strand, within Synpcc7942_0415 at 405.473 kb on + strand, within Synpcc7942_0415 at 405.511 kb on - strand, within Synpcc7942_0415 at 405.538 kb on + strand, within Synpcc7942_0415 at 405.541 kb on - strand, within Synpcc7942_0415 at 405.543 kb on + strand, within Synpcc7942_0415 at 405.543 kb on + strand, within Synpcc7942_0415 at 405.546 kb on - strand, within Synpcc7942_0415 at 405.591 kb on - strand, within Synpcc7942_0415 at 405.608 kb on - strand, within Synpcc7942_0415 at 405.627 kb on - strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.642 kb on - strand, within Synpcc7942_0415 at 405.642 kb on - strand, within Synpcc7942_0415 at 405.646 kb on + strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.759 kb on - strand, within Synpcc7942_0415 at 405.759 kb on - strand, within Synpcc7942_0415 at 405.793 kb on + strand, within Synpcc7942_0415 at 405.799 kb on - strand, within Synpcc7942_0415 at 405.833 kb on - strand, within Synpcc7942_0415 at 405.833 kb on - strand, within Synpcc7942_0415 at 405.844 kb on + strand, within Synpcc7942_0415 at 405.844 kb on + strand, within Synpcc7942_0415 at 405.849 kb on + strand, within Synpcc7942_0415 at 405.850 kb on + strand, within Synpcc7942_0415 at 405.856 kb on + strand, within Synpcc7942_0415 at 405.856 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.904 kb on + strand, within Synpcc7942_0415 at 405.907 kb on - strand, within Synpcc7942_0415 at 405.918 kb on + strand, within Synpcc7942_0415 at 405.939 kb on + strand, within Synpcc7942_0415 at 405.955 kb on + strand, within Synpcc7942_0415 at 405.958 kb on + strand, within Synpcc7942_0415 at 405.958 kb on + strand at 405.958 kb on + strand, within Synpcc7942_0415 at 406.008 kb on - strand, within Synpcc7942_0415 at 406.051 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.062 kb on + strand at 406.090 kb on + strand at 406.107 kb on - strand at 406.107 kb on - strand at 406.117 kb on - strand at 406.131 kb on + strand at 406.139 kb on - strand at 406.153 kb on + strand at 406.155 kb on + strand at 406.155 kb on + strand at 406.161 kb on - strand at 406.163 kb on - strand at 406.163 kb on - strand at 406.165 kb on + strand at 406.172 kb on + strand at 406.173 kb on - strand at 406.173 kb on - strand at 406.180 kb on - strand at 406.222 kb on - strand at 406.245 kb on + strand at 406.263 kb on - strand at 406.484 kb on + strand, within Synpcc7942_0416 at 406.500 kb on + strand, within Synpcc7942_0416 at 406.533 kb on + strand at 406.547 kb on + strand at 406.555 kb on - strand, within Synpcc7942_0416 at 406.555 kb on - strand, within Synpcc7942_0416 at 406.562 kb on + strand, within Synpcc7942_0416 at 406.583 kb on + strand, within Synpcc7942_0416 at 406.659 kb on + strand, within Synpcc7942_0416 at 406.667 kb on - strand, within Synpcc7942_0416 at 406.690 kb on - strand, within Synpcc7942_0416 at 406.690 kb on - strand, within Synpcc7942_0416 at 406.716 kb on + strand, within Synpcc7942_0416 at 406.724 kb on - strand, within Synpcc7942_0416 at 406.773 kb on + strand at 406.798 kb on + strand at 406.808 kb on - strand at 406.868 kb on - strand at 406.934 kb on + strand at 406.987 kb on - strand at 407.036 kb on + strand, within Synpcc7942_0417 at 407.039 kb on - strand, within Synpcc7942_0417 at 407.041 kb on + strand, within Synpcc7942_0417 at 407.044 kb on - strand, within Synpcc7942_0417 at 407.044 kb on - strand, within Synpcc7942_0417 at 407.049 kb on - strand, within Synpcc7942_0417 at 407.088 kb on - strand, within Synpcc7942_0417 at 407.132 kb on + strand, within Synpcc7942_0417
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0001953125 mg/ml remove 404,186 + Synpcc7942_0414 0.14 -2.3 404,186 + Synpcc7942_0414 0.14 -2.8 404,193 - Synpcc7942_0414 0.15 -0.4 404,249 + Synpcc7942_0414 0.20 -3.7 404,253 + Synpcc7942_0414 0.20 -1.0 404,261 + Synpcc7942_0414 0.21 -1.3 404,261 - Synpcc7942_0414 0.21 -2.3 404,267 - Synpcc7942_0414 0.21 -2.0 404,317 - Synpcc7942_0414 0.26 -3.7 404,392 + Synpcc7942_0414 0.32 -1.6 404,443 + Synpcc7942_0414 0.36 -4.1 404,448 + Synpcc7942_0414 0.37 -2.3 404,451 - Synpcc7942_0414 0.37 +0.1 404,461 - Synpcc7942_0414 0.38 -2.0 404,511 - Synpcc7942_0414 0.42 -3.2 404,522 + Synpcc7942_0414 0.43 -3.3 404,522 + Synpcc7942_0414 0.43 -1.6 404,523 + Synpcc7942_0414 0.43 -3.5 404,523 + Synpcc7942_0414 0.43 -3.8 404,530 - Synpcc7942_0414 0.44 -2.0 404,531 - Synpcc7942_0414 0.44 -2.6 404,568 + Synpcc7942_0414 0.47 -1.5 404,568 + Synpcc7942_0414 0.47 -3.5 404,568 + Synpcc7942_0414 0.47 -2.0 404,576 - Synpcc7942_0414 0.48 -1.7 404,667 - Synpcc7942_0414 0.55 -1.0 404,691 - Synpcc7942_0414 0.58 -2.1 404,729 + Synpcc7942_0414 0.61 -2.3 404,734 - Synpcc7942_0414 0.61 -3.0 404,742 - Synpcc7942_0414 0.62 -3.8 404,742 - Synpcc7942_0414 0.62 -3.0 404,746 + Synpcc7942_0414 0.62 -1.2 404,769 + Synpcc7942_0414 0.64 -1.1 404,772 - Synpcc7942_0414 0.64 -2.0 404,772 - Synpcc7942_0414 0.64 -3.2 404,796 - Synpcc7942_0414 0.66 -5.3 404,800 + Synpcc7942_0414 0.67 -1.6 404,805 + Synpcc7942_0414 0.67 -2.4 404,823 + Synpcc7942_0414 0.69 -0.0 404,831 - Synpcc7942_0414 0.69 -0.0 404,860 + Synpcc7942_0414 0.72 -2.2 404,953 + Synpcc7942_0414 0.80 -2.3 404,953 + Synpcc7942_0414 0.80 -2.0 404,953 + Synpcc7942_0414 0.80 -3.8 404,954 - Synpcc7942_0414 0.80 -1.6 404,958 + Synpcc7942_0414 0.80 -1.6 404,961 - Synpcc7942_0414 0.81 -1.6 404,974 - Synpcc7942_0414 0.82 -1.2 404,976 + Synpcc7942_0414 0.82 -2.3 404,978 + Synpcc7942_0414 0.82 -3.0 405,019 + Synpcc7942_0414 0.86 -3.6 405,022 - Synpcc7942_0414 0.86 -1.3 405,027 + Synpcc7942_0414 0.86 -4.9 405,076 - -2.1 405,081 + -3.8 405,081 + -1.2 405,145 + +2.8 405,183 + -0.4 405,206 + -2.5 405,206 + -2.8 405,208 + +0.7 405,208 + +0.4 405,208 + +0.8 405,208 + -0.6 405,208 + -0.5 405,208 + +2.8 405,208 + +1.0 405,208 + -0.7 405,208 + -2.0 405,208 + +1.2 405,208 + +1.0 405,208 + -0.0 405,208 + +2.6 405,208 + -1.6 405,208 + +0.7 405,216 - +1.3 405,216 - +0.1 405,216 - -0.0 405,216 - +1.1 405,216 - -2.3 405,216 - +0.2 405,216 - +0.3 405,216 - +0.4 405,216 - +1.0 405,228 - -0.2 405,228 - +0.3 405,252 + +0.6 405,278 + +1.0 405,296 - Synpcc7942_0415 0.13 -0.7 405,323 + Synpcc7942_0415 0.16 +1.2 405,337 + Synpcc7942_0415 0.17 -0.4 405,353 + Synpcc7942_0415 0.19 +1.4 405,355 - Synpcc7942_0415 0.19 -3.2 405,368 + Synpcc7942_0415 0.20 +0.7 405,378 + Synpcc7942_0415 0.21 -2.2 405,391 + Synpcc7942_0415 0.23 +1.4 405,419 + Synpcc7942_0415 0.26 +0.1 405,419 + Synpcc7942_0415 0.26 +1.1 405,437 + Synpcc7942_0415 0.28 -1.6 405,438 + Synpcc7942_0415 0.28 -2.3 405,443 + Synpcc7942_0415 0.28 +0.1 405,443 + Synpcc7942_0415 0.28 +0.4 405,446 - Synpcc7942_0415 0.28 -2.6 405,473 + Synpcc7942_0415 0.31 +0.4 405,473 + Synpcc7942_0415 0.31 -2.5 405,511 - Synpcc7942_0415 0.35 +0.5 405,538 + Synpcc7942_0415 0.38 +1.5 405,541 - Synpcc7942_0415 0.38 +1.7 405,543 + Synpcc7942_0415 0.38 +0.3 405,543 + Synpcc7942_0415 0.38 +0.7 405,546 - Synpcc7942_0415 0.39 -3.5 405,591 - Synpcc7942_0415 0.43 -0.6 405,608 - Synpcc7942_0415 0.45 -2.6 405,627 - Synpcc7942_0415 0.47 -0.4 405,634 + Synpcc7942_0415 0.48 -0.6 405,634 + Synpcc7942_0415 0.48 +0.5 405,634 + Synpcc7942_0415 0.48 +2.1 405,634 + Synpcc7942_0415 0.48 +0.2 405,642 - Synpcc7942_0415 0.48 +0.3 405,642 - Synpcc7942_0415 0.48 +2.3 405,646 + Synpcc7942_0415 0.49 +1.6 405,654 - Synpcc7942_0415 0.50 +0.7 405,654 - Synpcc7942_0415 0.50 +0.3 405,654 - Synpcc7942_0415 0.50 +1.3 405,654 - Synpcc7942_0415 0.50 -2.3 405,759 - Synpcc7942_0415 0.60 +1.3 405,759 - Synpcc7942_0415 0.60 -1.1 405,793 + Synpcc7942_0415 0.64 -1.6 405,799 - Synpcc7942_0415 0.65 +0.8 405,833 - Synpcc7942_0415 0.68 -1.0 405,833 - Synpcc7942_0415 0.68 -2.0 405,844 + Synpcc7942_0415 0.69 +1.1 405,844 + Synpcc7942_0415 0.69 +1.3 405,849 + Synpcc7942_0415 0.70 -1.6 405,850 + Synpcc7942_0415 0.70 +0.3 405,856 + Synpcc7942_0415 0.70 +0.3 405,856 + Synpcc7942_0415 0.70 +1.6 405,884 + Synpcc7942_0415 0.73 +0.2 405,884 + Synpcc7942_0415 0.73 +1.7 405,884 + Synpcc7942_0415 0.73 +0.5 405,904 + Synpcc7942_0415 0.75 +0.2 405,907 - Synpcc7942_0415 0.76 -0.3 405,918 + Synpcc7942_0415 0.77 -1.6 405,939 + Synpcc7942_0415 0.79 +0.7 405,955 + Synpcc7942_0415 0.80 +1.7 405,958 + Synpcc7942_0415 0.81 +0.6 405,958 + +2.0 405,958 + Synpcc7942_0415 0.81 -0.2 406,008 - Synpcc7942_0415 0.86 +1.2 406,051 + -2.0 406,056 + +2.3 406,056 + -0.3 406,062 + +1.6 406,090 + -3.2 406,107 - +0.3 406,107 - -0.9 406,117 - -1.0 406,131 + +1.3 406,139 - +0.6 406,153 + -0.7 406,155 + +1.1 406,155 + -1.6 406,161 - +1.6 406,163 - -0.0 406,163 - +0.2 406,165 + -0.2 406,172 + -1.6 406,173 - +0.6 406,173 - -0.4 406,180 - +0.3 406,222 - -2.8 406,245 + -1.9 406,263 - -2.0 406,484 + Synpcc7942_0416 0.25 +0.1 406,500 + Synpcc7942_0416 0.29 -0.3 406,533 + -0.0 406,547 + -0.0 406,555 - Synpcc7942_0416 0.43 -2.6 406,555 - Synpcc7942_0416 0.43 +1.2 406,562 + Synpcc7942_0416 0.45 -0.6 406,583 + Synpcc7942_0416 0.51 -2.7 406,659 + Synpcc7942_0416 0.70 -1.0 406,667 - Synpcc7942_0416 0.72 -2.9 406,690 - Synpcc7942_0416 0.78 -2.6 406,690 - Synpcc7942_0416 0.78 +2.0 406,716 + Synpcc7942_0416 0.85 -0.8 406,724 - Synpcc7942_0416 0.87 +0.1 406,773 + -0.9 406,798 + -3.0 406,808 - +0.4 406,868 - +0.2 406,934 + +0.3 406,987 - -1.0 407,036 + Synpcc7942_0417 0.12 -2.1 407,039 - Synpcc7942_0417 0.12 -3.1 407,041 + Synpcc7942_0417 0.13 -0.2 407,044 - Synpcc7942_0417 0.13 -0.3 407,044 - Synpcc7942_0417 0.13 -0.5 407,049 - Synpcc7942_0417 0.13 +2.3 407,088 - Synpcc7942_0417 0.16 -0.9 407,132 + Synpcc7942_0417 0.19 -1.6
Or see this region's nucleotide sequence