Experiment: Rifampicin 0.0001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysA and Synpcc7942_0263 are separated by 79 nucleotides Synpcc7942_0263 and uppS overlap by 4 nucleotides uppS and Synpcc7942_0265 are separated by 12 nucleotides Synpcc7942_0265 and dnaJ4 overlap by 23 nucleotides
Synpcc7942_0262: lysA - diaminopimelate decarboxylase, at 259,226 to 260,620
lysA
Synpcc7942_0263: Synpcc7942_0263 - Protein of unknown function DUF147, at 260,700 to 261,620
_0263
Synpcc7942_0264: uppS - Undecaprenyl pyrophosphate synthetase, at 261,617 to 262,372
uppS
Synpcc7942_0265: Synpcc7942_0265 - hypothetical protein, at 262,385 to 262,660
_0265
Synpcc7942_0266: dnaJ4 - Heat shock protein DnaJ-like, at 262,638 to 263,195
dnaJ4
Position (kb) 261
262
263 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 260.655 kb on + strand at 260.663 kb on - strand at 260.663 kb on - strand at 260.667 kb on + strand at 260.667 kb on + strand at 260.667 kb on + strand at 260.667 kb on + strand at 260.675 kb on - strand at 260.675 kb on - strand at 260.675 kb on - strand at 260.675 kb on - strand at 260.675 kb on - strand at 260.690 kb on + strand at 260.690 kb on + strand at 260.690 kb on + strand at 260.696 kb on + strand at 260.698 kb on - strand at 260.704 kb on - strand at 260.834 kb on + strand, within Synpcc7942_0263 at 260.844 kb on + strand, within Synpcc7942_0263 at 260.849 kb on + strand, within Synpcc7942_0263 at 260.859 kb on + strand, within Synpcc7942_0263 at 260.904 kb on - strand, within Synpcc7942_0263 at 260.951 kb on + strand, within Synpcc7942_0263 at 260.951 kb on - strand, within Synpcc7942_0263 at 261.146 kb on - strand, within Synpcc7942_0263 at 261.195 kb on + strand, within Synpcc7942_0263 at 261.209 kb on + strand, within Synpcc7942_0263 at 261.289 kb on + strand, within Synpcc7942_0263 at 261.304 kb on + strand, within Synpcc7942_0263 at 262.367 kb on + strand at 262.381 kb on - strand at 262.383 kb on + strand at 262.386 kb on - strand at 262.397 kb on - strand at 262.417 kb on + strand, within Synpcc7942_0265 at 262.422 kb on + strand, within Synpcc7942_0265 at 262.422 kb on - strand, within Synpcc7942_0265 at 262.453 kb on + strand, within Synpcc7942_0265 at 262.454 kb on + strand, within Synpcc7942_0265 at 262.462 kb on - strand, within Synpcc7942_0265 at 262.479 kb on + strand, within Synpcc7942_0265 at 262.503 kb on + strand, within Synpcc7942_0265 at 262.503 kb on + strand, within Synpcc7942_0265 at 262.514 kb on + strand, within Synpcc7942_0265 at 262.535 kb on + strand, within Synpcc7942_0265 at 262.545 kb on + strand, within Synpcc7942_0265 at 262.553 kb on + strand, within Synpcc7942_0265 at 262.561 kb on - strand, within Synpcc7942_0265 at 262.641 kb on - strand at 262.643 kb on - strand at 262.656 kb on + strand at 262.711 kb on - strand, within dnaJ4 at 262.718 kb on - strand, within dnaJ4 at 262.733 kb on - strand, within dnaJ4 at 262.754 kb on + strand, within dnaJ4 at 262.789 kb on + strand, within dnaJ4 at 262.797 kb on - strand at 262.797 kb on - strand, within dnaJ4 at 262.799 kb on + strand, within dnaJ4 at 262.818 kb on - strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.881 kb on - strand, within dnaJ4 at 262.897 kb on + strand, within dnaJ4 at 262.908 kb on + strand, within dnaJ4 at 262.927 kb on + strand, within dnaJ4 at 262.928 kb on + strand, within dnaJ4 at 262.936 kb on - strand at 262.941 kb on - strand, within dnaJ4 at 262.946 kb on - strand, within dnaJ4 at 262.963 kb on + strand, within dnaJ4 at 262.966 kb on - strand, within dnaJ4 at 262.971 kb on - strand, within dnaJ4 at 262.989 kb on + strand, within dnaJ4 at 263.011 kb on + strand, within dnaJ4 at 263.022 kb on - strand, within dnaJ4 at 263.024 kb on - strand, within dnaJ4 at 263.034 kb on - strand, within dnaJ4 at 263.034 kb on - strand, within dnaJ4 at 263.053 kb on + strand, within dnaJ4 at 263.068 kb on + strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.102 kb on + strand, within dnaJ4 at 263.109 kb on - strand, within dnaJ4 at 263.109 kb on - strand, within dnaJ4 at 263.111 kb on + strand, within dnaJ4 at 263.116 kb on + strand, within dnaJ4 at 263.119 kb on - strand, within dnaJ4 at 263.119 kb on - strand, within dnaJ4 at 263.124 kb on - strand, within dnaJ4 at 263.124 kb on - strand, within dnaJ4 at 263.178 kb on - strand at 263.185 kb on - strand at 263.195 kb on - strand at 263.225 kb on + strand at 263.230 kb on + strand at 263.233 kb on - strand at 263.237 kb on - strand at 263.238 kb on - strand at 263.267 kb on + strand at 263.296 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0001953125 mg/ml remove 260,655 + -1.6 260,663 - -2.1 260,663 - -2.5 260,667 + -0.9 260,667 + -1.6 260,667 + -2.1 260,667 + -1.8 260,675 - -1.4 260,675 - -0.3 260,675 - -1.1 260,675 - -4.6 260,675 - -2.1 260,690 + -0.2 260,690 + +0.9 260,690 + +1.9 260,696 + +0.4 260,698 - +0.7 260,704 - +2.1 260,834 + Synpcc7942_0263 0.15 -0.5 260,844 + Synpcc7942_0263 0.16 -2.9 260,849 + Synpcc7942_0263 0.16 -4.1 260,859 + Synpcc7942_0263 0.17 -2.6 260,904 - Synpcc7942_0263 0.22 +0.2 260,951 + Synpcc7942_0263 0.27 -5.0 260,951 - Synpcc7942_0263 0.27 -0.1 261,146 - Synpcc7942_0263 0.48 -2.1 261,195 + Synpcc7942_0263 0.54 -2.6 261,209 + Synpcc7942_0263 0.55 -1.1 261,289 + Synpcc7942_0263 0.64 -2.4 261,304 + Synpcc7942_0263 0.66 -2.9 262,367 + -2.1 262,381 - -0.5 262,383 + +1.3 262,386 - -0.1 262,397 - +0.7 262,417 + Synpcc7942_0265 0.12 +1.3 262,422 + Synpcc7942_0265 0.13 +1.4 262,422 - Synpcc7942_0265 0.13 -2.1 262,453 + Synpcc7942_0265 0.25 +1.8 262,454 + Synpcc7942_0265 0.25 +2.1 262,462 - Synpcc7942_0265 0.28 +0.2 262,479 + Synpcc7942_0265 0.34 -0.1 262,503 + Synpcc7942_0265 0.43 +0.9 262,503 + Synpcc7942_0265 0.43 +2.8 262,514 + Synpcc7942_0265 0.47 -0.7 262,535 + Synpcc7942_0265 0.54 +2.4 262,545 + Synpcc7942_0265 0.58 +0.5 262,553 + Synpcc7942_0265 0.61 +0.9 262,561 - Synpcc7942_0265 0.64 +1.2 262,641 - +3.3 262,643 - +0.5 262,656 + +1.1 262,711 - dnaJ4 Synpcc7942_0266 0.13 -1.6 262,718 - dnaJ4 Synpcc7942_0266 0.14 +0.6 262,733 - dnaJ4 Synpcc7942_0266 0.17 +0.3 262,754 + dnaJ4 Synpcc7942_0266 0.21 -0.9 262,789 + dnaJ4 Synpcc7942_0266 0.27 -1.6 262,797 - -0.1 262,797 - dnaJ4 Synpcc7942_0266 0.28 -1.1 262,799 + dnaJ4 Synpcc7942_0266 0.29 -1.0 262,818 - dnaJ4 Synpcc7942_0266 0.32 -0.5 262,827 + dnaJ4 Synpcc7942_0266 0.34 -0.6 262,827 + dnaJ4 Synpcc7942_0266 0.34 -1.1 262,827 + dnaJ4 Synpcc7942_0266 0.34 -0.5 262,881 - dnaJ4 Synpcc7942_0266 0.44 +1.5 262,897 + dnaJ4 Synpcc7942_0266 0.46 +2.3 262,908 + dnaJ4 Synpcc7942_0266 0.48 -2.4 262,927 + dnaJ4 Synpcc7942_0266 0.52 +0.1 262,928 + dnaJ4 Synpcc7942_0266 0.52 -1.5 262,936 - -1.6 262,941 - dnaJ4 Synpcc7942_0266 0.54 +0.7 262,946 - dnaJ4 Synpcc7942_0266 0.55 -1.6 262,963 + dnaJ4 Synpcc7942_0266 0.58 -2.9 262,966 - dnaJ4 Synpcc7942_0266 0.59 -0.5 262,971 - dnaJ4 Synpcc7942_0266 0.60 -1.1 262,989 + dnaJ4 Synpcc7942_0266 0.63 +2.1 263,011 + dnaJ4 Synpcc7942_0266 0.67 -0.1 263,022 - dnaJ4 Synpcc7942_0266 0.69 -3.5 263,024 - dnaJ4 Synpcc7942_0266 0.69 -0.9 263,034 - dnaJ4 Synpcc7942_0266 0.71 -1.3 263,034 - dnaJ4 Synpcc7942_0266 0.71 +1.8 263,053 + dnaJ4 Synpcc7942_0266 0.74 +0.7 263,068 + dnaJ4 Synpcc7942_0266 0.77 +0.5 263,076 - dnaJ4 Synpcc7942_0266 0.78 +3.5 263,076 - dnaJ4 Synpcc7942_0266 0.78 +0.9 263,076 - dnaJ4 Synpcc7942_0266 0.78 -0.1 263,102 + dnaJ4 Synpcc7942_0266 0.83 +3.3 263,109 - dnaJ4 Synpcc7942_0266 0.84 -2.6 263,109 - dnaJ4 Synpcc7942_0266 0.84 -0.8 263,111 + dnaJ4 Synpcc7942_0266 0.85 -1.0 263,116 + dnaJ4 Synpcc7942_0266 0.86 +0.5 263,119 - dnaJ4 Synpcc7942_0266 0.86 -0.5 263,119 - dnaJ4 Synpcc7942_0266 0.86 -1.3 263,124 - dnaJ4 Synpcc7942_0266 0.87 -0.5 263,124 - dnaJ4 Synpcc7942_0266 0.87 +1.5 263,178 - +0.3 263,185 - -3.4 263,195 - -0.3 263,225 + +0.4 263,230 + +1.5 263,233 - +1.9 263,237 - +0.8 263,238 - +0.6 263,267 + +1.5 263,296 + +0.6
Or see this region's nucleotide sequence