Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06580 and H281DRAFT_06581 are separated by 121 nucleotides H281DRAFT_06581 and H281DRAFT_06582 are separated by 111 nucleotides
H281DRAFT_06580: H281DRAFT_06580 - DNA-binding transcriptional regulator, LysR family, at 21,711 to 22,622
_06580
H281DRAFT_06581: H281DRAFT_06581 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 22,744 to 23,475
_06581
H281DRAFT_06582: H281DRAFT_06582 - Predicted arabinose efflux permease, MFS family, at 23,587 to 24,831
_06582
Position (kb) 22
23
24 Strain fitness (log2 ratio) -1
0
1
2
3 at 21.939 kb on + strand, within H281DRAFT_06580 at 21.940 kb on - strand, within H281DRAFT_06580 at 21.940 kb on - strand, within H281DRAFT_06580 at 21.978 kb on + strand, within H281DRAFT_06580 at 22.103 kb on - strand, within H281DRAFT_06580 at 22.238 kb on - strand, within H281DRAFT_06580 at 22.332 kb on + strand, within H281DRAFT_06580 at 22.333 kb on - strand, within H281DRAFT_06580 at 22.384 kb on + strand, within H281DRAFT_06580 at 22.396 kb on - strand, within H281DRAFT_06580 at 22.667 kb on - strand at 22.667 kb on - strand at 22.667 kb on - strand at 22.730 kb on - strand at 22.967 kb on + strand, within H281DRAFT_06581 at 23.359 kb on + strand, within H281DRAFT_06581 at 23.360 kb on - strand, within H281DRAFT_06581 at 23.820 kb on + strand, within H281DRAFT_06582 at 23.820 kb on + strand, within H281DRAFT_06582 at 23.821 kb on - strand, within H281DRAFT_06582 at 23.826 kb on - strand, within H281DRAFT_06582 at 23.955 kb on + strand, within H281DRAFT_06582 at 24.203 kb on - strand, within H281DRAFT_06582 at 24.218 kb on + strand, within H281DRAFT_06582 at 24.219 kb on - strand, within H281DRAFT_06582 at 24.250 kb on + strand, within H281DRAFT_06582 at 24.273 kb on + strand, within H281DRAFT_06582 at 24.274 kb on - strand, within H281DRAFT_06582
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 21,939 + H281DRAFT_06580 0.25 +0.3 21,940 - H281DRAFT_06580 0.25 +0.3 21,940 - H281DRAFT_06580 0.25 -0.0 21,978 + H281DRAFT_06580 0.29 +0.1 22,103 - H281DRAFT_06580 0.43 +0.9 22,238 - H281DRAFT_06580 0.58 -0.0 22,332 + H281DRAFT_06580 0.68 +1.1 22,333 - H281DRAFT_06580 0.68 +0.6 22,384 + H281DRAFT_06580 0.74 -1.3 22,396 - H281DRAFT_06580 0.75 +0.6 22,667 - +0.7 22,667 - -0.8 22,667 - +0.2 22,730 - -0.2 22,967 + H281DRAFT_06581 0.30 +0.8 23,359 + H281DRAFT_06581 0.84 +0.9 23,360 - H281DRAFT_06581 0.84 +0.0 23,820 + H281DRAFT_06582 0.19 -0.0 23,820 + H281DRAFT_06582 0.19 -0.2 23,821 - H281DRAFT_06582 0.19 -0.9 23,826 - H281DRAFT_06582 0.19 +0.9 23,955 + H281DRAFT_06582 0.30 -0.5 24,203 - H281DRAFT_06582 0.49 -0.6 24,218 + H281DRAFT_06582 0.51 -0.7 24,219 - H281DRAFT_06582 0.51 +0.6 24,250 + H281DRAFT_06582 0.53 +2.8 24,273 + H281DRAFT_06582 0.55 +0.3 24,274 - H281DRAFT_06582 0.55 +0.6
Or see this region's nucleotide sequence