Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06198 and H281DRAFT_06199 are separated by 942 nucleotides H281DRAFT_06199 and H281DRAFT_06200 are separated by 316 nucleotides H281DRAFT_06200 and H281DRAFT_06201 are separated by 140 nucleotides
H281DRAFT_06198: H281DRAFT_06198 - hypothetical protein, at 86,416 to 86,931
_06198
H281DRAFT_06199: H281DRAFT_06199 - muramoyltetrapeptide carboxypeptidase, at 87,874 to 88,737
_06199
H281DRAFT_06200: H281DRAFT_06200 - hypothetical protein, at 89,054 to 89,311
_06200
H281DRAFT_06201: H281DRAFT_06201 - hypothetical protein, at 89,452 to 90,225
_06201
Position (kb) 87
88
89 Strain fitness (log2 ratio) -1
0
1
2 at 86.948 kb on - strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.969 kb on - strand at 86.973 kb on + strand at 86.973 kb on + strand at 86.973 kb on + strand at 86.974 kb on - strand at 86.980 kb on - strand at 86.980 kb on - strand at 86.980 kb on - strand at 86.984 kb on + strand at 86.994 kb on - strand at 86.994 kb on - strand at 87.018 kb on - strand at 87.110 kb on + strand at 87.111 kb on - strand at 87.123 kb on - strand at 87.124 kb on + strand at 87.124 kb on + strand at 87.124 kb on + strand at 87.124 kb on + strand at 87.124 kb on + strand at 87.124 kb on + strand at 87.124 kb on + strand at 87.124 kb on + strand at 87.125 kb on - strand at 87.125 kb on - strand at 87.125 kb on - strand at 87.338 kb on + strand at 87.338 kb on + strand at 87.338 kb on + strand at 87.338 kb on + strand at 87.338 kb on + strand at 87.339 kb on - strand at 87.350 kb on + strand at 87.351 kb on - strand at 87.357 kb on + strand at 87.358 kb on - strand at 87.359 kb on + strand at 87.360 kb on - strand at 87.386 kb on + strand at 87.386 kb on + strand at 87.387 kb on - strand at 87.387 kb on - strand at 87.387 kb on - strand at 87.405 kb on - strand at 87.443 kb on - strand at 87.500 kb on - strand at 87.500 kb on - strand at 87.517 kb on + strand at 87.517 kb on + strand at 87.518 kb on - strand at 87.518 kb on - strand at 87.518 kb on - strand at 87.527 kb on - strand at 87.528 kb on + strand at 87.635 kb on + strand at 87.658 kb on + strand at 87.658 kb on + strand at 87.659 kb on - strand at 87.805 kb on + strand at 87.805 kb on + strand at 87.806 kb on - strand at 87.811 kb on + strand at 87.812 kb on - strand at 87.860 kb on - strand at 87.919 kb on + strand at 87.965 kb on + strand, within H281DRAFT_06199 at 87.965 kb on + strand, within H281DRAFT_06199 at 87.966 kb on - strand, within H281DRAFT_06199 at 87.966 kb on - strand, within H281DRAFT_06199 at 87.966 kb on - strand, within H281DRAFT_06199 at 87.966 kb on - strand, within H281DRAFT_06199 at 88.111 kb on - strand, within H281DRAFT_06199 at 88.144 kb on + strand, within H281DRAFT_06199 at 88.144 kb on + strand, within H281DRAFT_06199 at 88.145 kb on - strand, within H281DRAFT_06199 at 88.145 kb on - strand, within H281DRAFT_06199 at 88.145 kb on - strand, within H281DRAFT_06199 at 88.306 kb on - strand, within H281DRAFT_06199 at 88.312 kb on - strand, within H281DRAFT_06199 at 88.528 kb on - strand, within H281DRAFT_06199 at 88.528 kb on - strand, within H281DRAFT_06199 at 88.567 kb on + strand, within H281DRAFT_06199 at 88.568 kb on - strand, within H281DRAFT_06199 at 88.754 kb on + strand at 88.754 kb on + strand at 88.755 kb on - strand at 88.801 kb on + strand at 88.801 kb on + strand at 88.801 kb on + strand at 89.002 kb on + strand at 89.002 kb on + strand at 89.056 kb on - strand at 89.067 kb on - strand at 89.089 kb on - strand, within H281DRAFT_06200 at 89.089 kb on - strand, within H281DRAFT_06200 at 89.162 kb on - strand, within H281DRAFT_06200 at 89.280 kb on + strand, within H281DRAFT_06200 at 89.280 kb on + strand, within H281DRAFT_06200 at 89.281 kb on - strand, within H281DRAFT_06200 at 89.281 kb on - strand, within H281DRAFT_06200 at 89.281 kb on - strand, within H281DRAFT_06200 at 89.297 kb on - strand at 89.351 kb on - strand at 89.357 kb on + strand at 89.357 kb on + strand at 89.357 kb on + strand at 89.357 kb on + strand at 89.358 kb on - strand at 89.358 kb on - strand at 89.400 kb on + strand at 89.400 kb on + strand at 89.401 kb on - strand at 89.419 kb on - strand at 89.466 kb on + strand at 89.466 kb on + strand at 89.603 kb on + strand, within H281DRAFT_06201 at 89.603 kb on + strand, within H281DRAFT_06201 at 89.610 kb on + strand, within H281DRAFT_06201 at 89.645 kb on - strand, within H281DRAFT_06201 at 89.708 kb on + strand, within H281DRAFT_06201 at 89.708 kb on + strand, within H281DRAFT_06201 at 89.708 kb on + strand, within H281DRAFT_06201 at 89.708 kb on + strand, within H281DRAFT_06201 at 89.708 kb on + strand, within H281DRAFT_06201 at 89.709 kb on - strand, within H281DRAFT_06201 at 89.709 kb on - strand, within H281DRAFT_06201 at 89.709 kb on - strand, within H281DRAFT_06201 at 89.709 kb on - strand, within H281DRAFT_06201 at 89.709 kb on - strand, within H281DRAFT_06201 at 89.709 kb on - strand, within H281DRAFT_06201 at 89.709 kb on - strand, within H281DRAFT_06201 at 89.710 kb on + strand, within H281DRAFT_06201 at 89.710 kb on + strand, within H281DRAFT_06201 at 89.711 kb on - strand, within H281DRAFT_06201 at 89.711 kb on - strand, within H281DRAFT_06201 at 89.711 kb on - strand, within H281DRAFT_06201 at 89.712 kb on + strand, within H281DRAFT_06201 at 89.712 kb on + strand, within H281DRAFT_06201 at 89.712 kb on + strand, within H281DRAFT_06201 at 89.712 kb on + strand, within H281DRAFT_06201 at 89.712 kb on + strand, within H281DRAFT_06201 at 89.712 kb on + strand, within H281DRAFT_06201 at 89.713 kb on - strand, within H281DRAFT_06201 at 89.713 kb on - strand, within H281DRAFT_06201 at 89.737 kb on + strand, within H281DRAFT_06201
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 86,948 - +0.5 86,968 + +0.2 86,968 + +0.0 86,968 + +0.1 86,969 - -0.2 86,973 + +0.0 86,973 + +0.3 86,973 + +0.0 86,974 - -1.4 86,980 - -0.6 86,980 - -0.2 86,980 - +0.4 86,984 + +0.3 86,994 - +0.1 86,994 - -0.4 87,018 - -0.5 87,110 + -0.6 87,111 - +0.6 87,123 - -0.2 87,124 + +0.5 87,124 + -0.0 87,124 + -0.9 87,124 + -0.2 87,124 + +2.2 87,124 + -0.8 87,124 + +0.6 87,124 + -0.5 87,125 - +1.4 87,125 - -0.5 87,125 - -0.3 87,338 + -0.1 87,338 + -0.1 87,338 + -0.0 87,338 + +0.8 87,338 + +0.8 87,339 - -1.0 87,350 + +0.9 87,351 - +0.3 87,357 + -0.2 87,358 - -0.3 87,359 + +0.0 87,360 - +0.3 87,386 + +1.3 87,386 + -0.3 87,387 - +1.4 87,387 - +0.3 87,387 - +0.8 87,405 - -0.5 87,443 - +0.2 87,500 - +0.7 87,500 - +0.6 87,517 + +1.4 87,517 + -0.0 87,518 - +0.3 87,518 - +0.9 87,518 - -0.0 87,527 - +0.4 87,528 + -0.6 87,635 + +0.2 87,658 + -0.1 87,658 + -0.9 87,659 - +1.2 87,805 + +0.3 87,805 + +0.3 87,806 - +0.5 87,811 + -0.4 87,812 - -0.2 87,860 - +0.0 87,919 + +1.6 87,965 + H281DRAFT_06199 0.11 -0.1 87,965 + H281DRAFT_06199 0.11 -0.1 87,966 - H281DRAFT_06199 0.11 -0.1 87,966 - H281DRAFT_06199 0.11 +0.2 87,966 - H281DRAFT_06199 0.11 +0.5 87,966 - H281DRAFT_06199 0.11 +0.5 88,111 - H281DRAFT_06199 0.27 -0.1 88,144 + H281DRAFT_06199 0.31 +0.5 88,144 + H281DRAFT_06199 0.31 +0.1 88,145 - H281DRAFT_06199 0.31 -0.1 88,145 - H281DRAFT_06199 0.31 -0.7 88,145 - H281DRAFT_06199 0.31 -0.7 88,306 - H281DRAFT_06199 0.50 -0.3 88,312 - H281DRAFT_06199 0.51 -1.0 88,528 - H281DRAFT_06199 0.76 +0.1 88,528 - H281DRAFT_06199 0.76 -1.2 88,567 + H281DRAFT_06199 0.80 -0.0 88,568 - H281DRAFT_06199 0.80 -0.7 88,754 + -0.7 88,754 + -0.7 88,755 - -0.2 88,801 + +0.8 88,801 + -0.0 88,801 + +0.2 89,002 + -0.5 89,002 + +0.5 89,056 - -0.6 89,067 - -0.2 89,089 - H281DRAFT_06200 0.14 -0.6 89,089 - H281DRAFT_06200 0.14 +0.4 89,162 - H281DRAFT_06200 0.42 -0.6 89,280 + H281DRAFT_06200 0.88 -0.5 89,280 + H281DRAFT_06200 0.88 +0.0 89,281 - H281DRAFT_06200 0.88 +0.0 89,281 - H281DRAFT_06200 0.88 -0.4 89,281 - H281DRAFT_06200 0.88 -0.1 89,297 - -0.1 89,351 - -0.0 89,357 + -0.7 89,357 + -0.2 89,357 + +0.1 89,357 + -0.4 89,358 - -0.1 89,358 - -0.3 89,400 + +0.3 89,400 + -0.3 89,401 - -0.1 89,419 - +0.3 89,466 + -0.6 89,466 + -0.8 89,603 + H281DRAFT_06201 0.20 +0.3 89,603 + H281DRAFT_06201 0.20 -0.4 89,610 + H281DRAFT_06201 0.20 +0.4 89,645 - H281DRAFT_06201 0.25 +0.4 89,708 + H281DRAFT_06201 0.33 -0.1 89,708 + H281DRAFT_06201 0.33 +0.2 89,708 + H281DRAFT_06201 0.33 +0.2 89,708 + H281DRAFT_06201 0.33 +0.6 89,708 + H281DRAFT_06201 0.33 -0.9 89,709 - H281DRAFT_06201 0.33 -0.3 89,709 - H281DRAFT_06201 0.33 +0.8 89,709 - H281DRAFT_06201 0.33 +0.2 89,709 - H281DRAFT_06201 0.33 +0.1 89,709 - H281DRAFT_06201 0.33 +0.8 89,709 - H281DRAFT_06201 0.33 -0.2 89,709 - H281DRAFT_06201 0.33 +0.4 89,710 + H281DRAFT_06201 0.33 +0.5 89,710 + H281DRAFT_06201 0.33 +0.7 89,711 - H281DRAFT_06201 0.33 -0.2 89,711 - H281DRAFT_06201 0.33 -0.2 89,711 - H281DRAFT_06201 0.33 -0.2 89,712 + H281DRAFT_06201 0.34 +0.8 89,712 + H281DRAFT_06201 0.34 -0.2 89,712 + H281DRAFT_06201 0.34 -0.3 89,712 + H281DRAFT_06201 0.34 -0.6 89,712 + H281DRAFT_06201 0.34 -0.9 89,712 + H281DRAFT_06201 0.34 -0.4 89,713 - H281DRAFT_06201 0.34 -0.2 89,713 - H281DRAFT_06201 0.34 +0.1 89,737 + H281DRAFT_06201 0.37 +0.0
Or see this region's nucleotide sequence