Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05138 and H281DRAFT_05139 are separated by 168 nucleotides H281DRAFT_05139 and H281DRAFT_05140 are separated by 91 nucleotides H281DRAFT_05140 and H281DRAFT_05141 are separated by 2 nucleotides H281DRAFT_05141 and H281DRAFT_05142 are separated by 58 nucleotides
H281DRAFT_05138: H281DRAFT_05138 - Predicted amino acid dehydrogenase, at 92,618 to 93,832
_05138
H281DRAFT_05139: H281DRAFT_05139 - Copper binding protein CusF, at 94,001 to 94,258
_05139
H281DRAFT_05140: H281DRAFT_05140 - Thiosulfate reductase cytochrome b subunit, at 94,350 to 94,997
_05140
H281DRAFT_05141: H281DRAFT_05141 - sulfoxide reductase catalytic subunit YedY, at 95,000 to 95,791
_05141
H281DRAFT_05142: H281DRAFT_05142 - hypothetical protein, at 95,850 to 96,464
_05142
Position (kb) 94
95 Strain fitness (log2 ratio) -1
0
1
2
3 at 93.375 kb on + strand, within H281DRAFT_05138 at 93.375 kb on + strand, within H281DRAFT_05138 at 93.376 kb on - strand, within H281DRAFT_05138 at 93.376 kb on - strand, within H281DRAFT_05138 at 93.387 kb on + strand, within H281DRAFT_05138 at 93.388 kb on - strand, within H281DRAFT_05138 at 93.652 kb on + strand, within H281DRAFT_05138 at 93.816 kb on + strand at 93.817 kb on - strand at 93.922 kb on + strand at 94.334 kb on + strand at 94.335 kb on - strand at 94.411 kb on - strand at 94.626 kb on + strand, within H281DRAFT_05140 at 94.626 kb on + strand, within H281DRAFT_05140 at 94.626 kb on + strand, within H281DRAFT_05140 at 94.627 kb on - strand, within H281DRAFT_05140 at 94.753 kb on - strand, within H281DRAFT_05140 at 94.776 kb on + strand at 94.776 kb on + strand, within H281DRAFT_05140 at 95.310 kb on - strand, within H281DRAFT_05141 at 95.310 kb on - strand, within H281DRAFT_05141 at 95.310 kb on - strand, within H281DRAFT_05141 at 95.315 kb on - strand, within H281DRAFT_05141 at 95.443 kb on + strand, within H281DRAFT_05141 at 95.443 kb on + strand, within H281DRAFT_05141 at 95.538 kb on - strand, within H281DRAFT_05141 at 95.565 kb on - strand, within H281DRAFT_05141 at 95.651 kb on + strand, within H281DRAFT_05141 at 95.652 kb on - strand, within H281DRAFT_05141 at 95.739 kb on - strand at 95.769 kb on - strand at 95.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 93,375 + H281DRAFT_05138 0.62 +0.8 93,375 + H281DRAFT_05138 0.62 -0.6 93,376 - H281DRAFT_05138 0.62 +0.6 93,376 - H281DRAFT_05138 0.62 -0.8 93,387 + H281DRAFT_05138 0.63 -0.1 93,388 - H281DRAFT_05138 0.63 +0.4 93,652 + H281DRAFT_05138 0.85 -0.0 93,816 + -0.6 93,817 - +0.7 93,922 + -0.1 94,334 + +0.8 94,335 - -0.4 94,411 - +0.1 94,626 + H281DRAFT_05140 0.43 +0.5 94,626 + H281DRAFT_05140 0.43 +0.6 94,626 + H281DRAFT_05140 0.43 -0.4 94,627 - H281DRAFT_05140 0.43 +0.7 94,753 - H281DRAFT_05140 0.62 +0.5 94,776 + +3.5 94,776 + H281DRAFT_05140 0.66 -0.1 95,310 - H281DRAFT_05141 0.39 -1.7 95,310 - H281DRAFT_05141 0.39 -0.2 95,310 - H281DRAFT_05141 0.39 -0.2 95,315 - H281DRAFT_05141 0.40 +0.8 95,443 + H281DRAFT_05141 0.56 -0.5 95,443 + H281DRAFT_05141 0.56 -0.4 95,538 - H281DRAFT_05141 0.68 +0.4 95,565 - H281DRAFT_05141 0.71 -0.2 95,651 + H281DRAFT_05141 0.82 +0.3 95,652 - H281DRAFT_05141 0.82 +0.2 95,739 - -0.3 95,769 - -0.4 95,846 - +0.5
Or see this region's nucleotide sequence