Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05097 and H281DRAFT_05098 are separated by 405 nucleotides H281DRAFT_05098 and H281DRAFT_05099 are separated by 250 nucleotides
H281DRAFT_05097: H281DRAFT_05097 - putative transposase, at 39,309 to 39,710
_05097
H281DRAFT_05098: H281DRAFT_05098 - DNA-binding transcriptional regulator, LysR family, at 40,116 to 41,018
_05098
H281DRAFT_05099: H281DRAFT_05099 - Aspartate/methionine/tyrosine aminotransferase, at 41,269 to 42,495
_05099
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1
2 at 39.265 kb on + strand at 39.265 kb on + strand at 39.310 kb on + strand at 39.462 kb on - strand, within H281DRAFT_05097 at 39.462 kb on - strand, within H281DRAFT_05097 at 39.465 kb on + strand, within H281DRAFT_05097 at 39.466 kb on - strand, within H281DRAFT_05097 at 39.466 kb on - strand, within H281DRAFT_05097 at 39.466 kb on - strand, within H281DRAFT_05097 at 39.480 kb on - strand, within H281DRAFT_05097 at 39.480 kb on - strand, within H281DRAFT_05097 at 39.730 kb on - strand at 39.814 kb on + strand at 39.815 kb on - strand at 39.853 kb on + strand at 39.853 kb on + strand at 39.854 kb on - strand at 39.924 kb on + strand at 39.925 kb on - strand at 39.928 kb on + strand at 39.937 kb on - strand at 40.021 kb on + strand at 40.139 kb on - strand at 40.139 kb on - strand at 40.176 kb on - strand at 40.707 kb on + strand, within H281DRAFT_05098 at 40.752 kb on + strand, within H281DRAFT_05098 at 40.752 kb on + strand, within H281DRAFT_05098 at 41.219 kb on + strand at 41.220 kb on - strand at 41.476 kb on + strand, within H281DRAFT_05099 at 41.477 kb on - strand, within H281DRAFT_05099 at 41.477 kb on - strand, within H281DRAFT_05099 at 41.478 kb on + strand, within H281DRAFT_05099 at 41.770 kb on - strand, within H281DRAFT_05099 at 41.770 kb on - strand, within H281DRAFT_05099 at 41.902 kb on + strand, within H281DRAFT_05099 at 41.914 kb on + strand, within H281DRAFT_05099 at 41.914 kb on + strand, within H281DRAFT_05099 at 41.915 kb on - strand, within H281DRAFT_05099 at 41.915 kb on - strand, within H281DRAFT_05099
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 39,265 + -0.4 39,265 + -0.3 39,310 + -0.4 39,462 - H281DRAFT_05097 0.38 -0.7 39,462 - H281DRAFT_05097 0.38 -0.8 39,465 + H281DRAFT_05097 0.39 -1.4 39,466 - H281DRAFT_05097 0.39 -0.6 39,466 - H281DRAFT_05097 0.39 -0.8 39,466 - H281DRAFT_05097 0.39 -1.1 39,480 - H281DRAFT_05097 0.43 +0.2 39,480 - H281DRAFT_05097 0.43 -1.0 39,730 - -0.3 39,814 + +0.2 39,815 - +0.5 39,853 + -0.6 39,853 + -0.4 39,854 - +0.7 39,924 + -0.5 39,925 - -0.1 39,928 + +0.3 39,937 - +2.2 40,021 + -0.1 40,139 - +0.9 40,139 - -0.4 40,176 - -0.2 40,707 + H281DRAFT_05098 0.65 +2.0 40,752 + H281DRAFT_05098 0.70 +0.3 40,752 + H281DRAFT_05098 0.70 -0.3 41,219 + +0.1 41,220 - +0.7 41,476 + H281DRAFT_05099 0.17 +0.5 41,477 - H281DRAFT_05099 0.17 -0.3 41,477 - H281DRAFT_05099 0.17 +0.3 41,478 + H281DRAFT_05099 0.17 -0.7 41,770 - H281DRAFT_05099 0.41 +0.4 41,770 - H281DRAFT_05099 0.41 -0.2 41,902 + H281DRAFT_05099 0.52 -0.9 41,914 + H281DRAFT_05099 0.53 -0.8 41,914 + H281DRAFT_05099 0.53 -0.1 41,915 - H281DRAFT_05099 0.53 +0.0 41,915 - H281DRAFT_05099 0.53 +0.1
Or see this region's nucleotide sequence