Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04961 and H281DRAFT_04962 are separated by 28 nucleotides H281DRAFT_04962 and H281DRAFT_04963 are separated by 134 nucleotides H281DRAFT_04963 and H281DRAFT_04964 are separated by 130 nucleotides H281DRAFT_04964 and H281DRAFT_04965 are separated by 17 nucleotides
H281DRAFT_04961: H281DRAFT_04961 - outer membrane transport energization protein ExbB, at 146,579 to 147,310
_04961
H281DRAFT_04962: H281DRAFT_04962 - outer membrane transport energization protein ExbD, at 147,339 to 147,758
_04962
H281DRAFT_04963: H281DRAFT_04963 - hypothetical protein, at 147,893 to 148,012
_04963
H281DRAFT_04964: H281DRAFT_04964 - transcriptional regulator, LysR family, at 148,143 to 149,243
_04964
H281DRAFT_04965: H281DRAFT_04965 - hypothetical protein, at 149,261 to 150,139
_04965
Position (kb) 148
149
150 Strain fitness (log2 ratio) -1
0
1
2 at 147.991 kb on + strand, within H281DRAFT_04963 at 148.013 kb on - strand at 148.044 kb on - strand at 148.086 kb on + strand at 148.258 kb on + strand, within H281DRAFT_04964 at 148.316 kb on - strand, within H281DRAFT_04964 at 148.329 kb on - strand, within H281DRAFT_04964 at 148.387 kb on + strand, within H281DRAFT_04964 at 148.388 kb on - strand, within H281DRAFT_04964 at 148.416 kb on + strand, within H281DRAFT_04964 at 148.416 kb on + strand, within H281DRAFT_04964 at 148.417 kb on - strand, within H281DRAFT_04964 at 148.428 kb on + strand, within H281DRAFT_04964 at 148.428 kb on + strand, within H281DRAFT_04964 at 148.429 kb on - strand, within H281DRAFT_04964 at 148.486 kb on - strand, within H281DRAFT_04964 at 148.520 kb on - strand, within H281DRAFT_04964 at 148.546 kb on - strand, within H281DRAFT_04964 at 148.641 kb on - strand, within H281DRAFT_04964 at 148.809 kb on + strand, within H281DRAFT_04964 at 148.810 kb on - strand, within H281DRAFT_04964 at 148.930 kb on + strand, within H281DRAFT_04964 at 149.102 kb on - strand, within H281DRAFT_04964 at 149.102 kb on - strand, within H281DRAFT_04964 at 149.204 kb on + strand at 149.204 kb on + strand at 149.205 kb on - strand at 149.229 kb on - strand at 149.234 kb on + strand at 149.235 kb on - strand at 149.292 kb on - strand at 149.292 kb on - strand at 149.292 kb on - strand at 149.292 kb on - strand at 149.408 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.472 kb on - strand at 149.472 kb on - strand, within H281DRAFT_04965 at 149.472 kb on - strand, within H281DRAFT_04965 at 149.575 kb on + strand, within H281DRAFT_04965 at 149.804 kb on + strand, within H281DRAFT_04965 at 149.869 kb on - strand, within H281DRAFT_04965 at 149.869 kb on - strand, within H281DRAFT_04965 at 149.901 kb on - strand, within H281DRAFT_04965 at 149.974 kb on + strand, within H281DRAFT_04965 at 149.975 kb on - strand, within H281DRAFT_04965 at 149.975 kb on - strand, within H281DRAFT_04965 at 150.051 kb on - strand, within H281DRAFT_04965 at 150.174 kb on - strand at 150.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 147,991 + H281DRAFT_04963 0.82 -0.4 148,013 - +0.1 148,044 - -0.1 148,086 + +0.4 148,258 + H281DRAFT_04964 0.10 -0.2 148,316 - H281DRAFT_04964 0.16 -1.0 148,329 - H281DRAFT_04964 0.17 -0.9 148,387 + H281DRAFT_04964 0.22 -0.7 148,388 - H281DRAFT_04964 0.22 +1.3 148,416 + H281DRAFT_04964 0.25 -0.2 148,416 + H281DRAFT_04964 0.25 -0.1 148,417 - H281DRAFT_04964 0.25 +0.1 148,428 + H281DRAFT_04964 0.26 -1.4 148,428 + H281DRAFT_04964 0.26 -0.4 148,429 - H281DRAFT_04964 0.26 -0.6 148,486 - H281DRAFT_04964 0.31 +2.1 148,520 - H281DRAFT_04964 0.34 +0.7 148,546 - H281DRAFT_04964 0.37 -1.2 148,641 - H281DRAFT_04964 0.45 -0.6 148,809 + H281DRAFT_04964 0.60 -0.5 148,810 - H281DRAFT_04964 0.61 +0.2 148,930 + H281DRAFT_04964 0.71 -0.0 149,102 - H281DRAFT_04964 0.87 -0.1 149,102 - H281DRAFT_04964 0.87 -0.1 149,204 + -1.6 149,204 + -0.7 149,205 - +0.1 149,229 - -1.4 149,234 + -0.6 149,235 - -0.1 149,292 - +0.0 149,292 - -0.3 149,292 - -0.2 149,292 - +0.1 149,408 + H281DRAFT_04965 0.17 -0.2 149,471 + H281DRAFT_04965 0.24 -1.3 149,471 + H281DRAFT_04965 0.24 -0.3 149,471 + H281DRAFT_04965 0.24 -0.2 149,471 + H281DRAFT_04965 0.24 -0.5 149,471 + H281DRAFT_04965 0.24 +0.2 149,471 + H281DRAFT_04965 0.24 +0.5 149,472 - +1.8 149,472 - H281DRAFT_04965 0.24 +0.6 149,472 - H281DRAFT_04965 0.24 +0.4 149,575 + H281DRAFT_04965 0.36 -0.6 149,804 + H281DRAFT_04965 0.62 +1.9 149,869 - H281DRAFT_04965 0.69 -0.5 149,869 - H281DRAFT_04965 0.69 +0.0 149,901 - H281DRAFT_04965 0.73 -0.1 149,974 + H281DRAFT_04965 0.81 -0.2 149,975 - H281DRAFT_04965 0.81 +0.3 149,975 - H281DRAFT_04965 0.81 +0.1 150,051 - H281DRAFT_04965 0.90 -0.6 150,174 - -0.3 150,174 - -0.1
Or see this region's nucleotide sequence