Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04901 and H281DRAFT_04902 are separated by 17 nucleotides H281DRAFT_04902 and H281DRAFT_04903 are separated by 116 nucleotides H281DRAFT_04903 and H281DRAFT_04904 overlap by 4 nucleotides
H281DRAFT_04901: H281DRAFT_04901 - microcin C transport system permease protein, at 53,313 to 54,365
_04901
H281DRAFT_04902: H281DRAFT_04902 - microcin C transport system substrate-binding protein, at 54,383 to 56,284
_04902
H281DRAFT_04903: H281DRAFT_04903 - outer membrane transport energization protein TonB, at 56,401 to 57,174
_04903
H281DRAFT_04904: H281DRAFT_04904 - outer membrane transport energization protein ExbD, at 57,171 to 57,590
_04904
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -1
0
1
2 at 53.971 kb on + strand, within H281DRAFT_04901 at 54.059 kb on - strand, within H281DRAFT_04901 at 54.356 kb on - strand at 54.514 kb on - strand at 54.531 kb on + strand at 54.532 kb on - strand at 54.532 kb on - strand at 54.733 kb on + strand, within H281DRAFT_04902 at 54.733 kb on + strand, within H281DRAFT_04902 at 54.733 kb on + strand, within H281DRAFT_04902 at 54.733 kb on + strand, within H281DRAFT_04902 at 54.735 kb on + strand, within H281DRAFT_04902 at 54.735 kb on + strand, within H281DRAFT_04902 at 54.736 kb on - strand, within H281DRAFT_04902 at 54.736 kb on - strand, within H281DRAFT_04902 at 54.736 kb on - strand, within H281DRAFT_04902 at 54.736 kb on - strand, within H281DRAFT_04902 at 54.777 kb on + strand, within H281DRAFT_04902 at 54.778 kb on - strand, within H281DRAFT_04902 at 55.156 kb on - strand, within H281DRAFT_04902 at 55.329 kb on + strand, within H281DRAFT_04902 at 55.450 kb on - strand, within H281DRAFT_04902 at 55.789 kb on - strand, within H281DRAFT_04902 at 56.014 kb on - strand, within H281DRAFT_04902 at 56.032 kb on - strand, within H281DRAFT_04902 at 56.079 kb on + strand, within H281DRAFT_04902 at 56.453 kb on - strand at 56.456 kb on + strand at 57.253 kb on + strand, within H281DRAFT_04904
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 53,971 + H281DRAFT_04901 0.62 -0.0 54,059 - H281DRAFT_04901 0.71 +0.4 54,356 - -1.4 54,514 - +1.6 54,531 + +0.3 54,532 - +0.7 54,532 - -0.3 54,733 + H281DRAFT_04902 0.18 +1.0 54,733 + H281DRAFT_04902 0.18 +0.2 54,733 + H281DRAFT_04902 0.18 -1.7 54,733 + H281DRAFT_04902 0.18 -0.4 54,735 + H281DRAFT_04902 0.19 +0.2 54,735 + H281DRAFT_04902 0.19 +0.6 54,736 - H281DRAFT_04902 0.19 +0.1 54,736 - H281DRAFT_04902 0.19 +0.2 54,736 - H281DRAFT_04902 0.19 +0.5 54,736 - H281DRAFT_04902 0.19 +1.8 54,777 + H281DRAFT_04902 0.21 +0.7 54,778 - H281DRAFT_04902 0.21 -0.0 55,156 - H281DRAFT_04902 0.41 +0.2 55,329 + H281DRAFT_04902 0.50 +0.0 55,450 - H281DRAFT_04902 0.56 +0.2 55,789 - H281DRAFT_04902 0.74 +0.8 56,014 - H281DRAFT_04902 0.86 +0.9 56,032 - H281DRAFT_04902 0.87 +0.3 56,079 + H281DRAFT_04902 0.89 +0.3 56,453 - +0.1 56,456 + +0.1 57,253 + H281DRAFT_04904 0.20 +0.1
Or see this region's nucleotide sequence