Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04900

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04899 and H281DRAFT_04900 overlap by 4 nucleotidesH281DRAFT_04900 and H281DRAFT_04901 overlap by 47 nucleotides H281DRAFT_04899: H281DRAFT_04899 - microcin C transport system ATP-binding protein, at 50,589 to 52,247 _04899 H281DRAFT_04900: H281DRAFT_04900 - microcin C transport system permease protein, at 52,244 to 53,359 _04900 H281DRAFT_04901: H281DRAFT_04901 - microcin C transport system permease protein, at 53,313 to 54,365 _04901 Position (kb) 52 53 54Strain fitness (log2 ratio) -1 0 1 2at 52.406 kb on + strand, within H281DRAFT_04900at 52.594 kb on - strand, within H281DRAFT_04900at 52.802 kb on + strand, within H281DRAFT_04900at 52.911 kb on + strand, within H281DRAFT_04900at 53.053 kb on - strand, within H281DRAFT_04900at 53.065 kb on - strand, within H281DRAFT_04900at 53.118 kb on - strand, within H281DRAFT_04900at 53.134 kb on - strand, within H281DRAFT_04900at 53.289 kb on - strandat 53.971 kb on + strand, within H281DRAFT_04901at 54.059 kb on - strand, within H281DRAFT_04901at 54.356 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
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52,406 + H281DRAFT_04900 0.15 +1.3
52,594 - H281DRAFT_04900 0.31 -0.2
52,802 + H281DRAFT_04900 0.50 +0.8
52,911 + H281DRAFT_04900 0.60 +0.2
53,053 - H281DRAFT_04900 0.72 +2.2
53,065 - H281DRAFT_04900 0.74 +0.6
53,118 - H281DRAFT_04900 0.78 -0.4
53,134 - H281DRAFT_04900 0.80 +0.2
53,289 - +0.4
53,971 + H281DRAFT_04901 0.62 -0.0
54,059 - H281DRAFT_04901 0.71 +0.4
54,356 - -1.4

Or see this region's nucleotide sequence