Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04660 and H281DRAFT_04661 overlap by 8 nucleotides H281DRAFT_04661 and H281DRAFT_04662 are separated by 148 nucleotides
H281DRAFT_04660: H281DRAFT_04660 - paraquat-inducible protein B, at 61,883 to 63,541
_04660
H281DRAFT_04661: H281DRAFT_04661 - paraquat-inducible protein A, at 63,534 to 64,043
_04661
H281DRAFT_04662: H281DRAFT_04662 - paraquat-inducible protein A, at 64,192 to 64,971
_04662
Position (kb) 63
64
65 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 62.535 kb on - strand, within H281DRAFT_04660 at 62.839 kb on - strand, within H281DRAFT_04660 at 63.017 kb on - strand, within H281DRAFT_04660 at 63.019 kb on + strand, within H281DRAFT_04660 at 63.019 kb on + strand, within H281DRAFT_04660 at 63.019 kb on + strand, within H281DRAFT_04660 at 63.020 kb on - strand, within H281DRAFT_04660 at 63.090 kb on + strand, within H281DRAFT_04660 at 63.218 kb on + strand, within H281DRAFT_04660 at 63.219 kb on - strand, within H281DRAFT_04660 at 63.219 kb on - strand, within H281DRAFT_04660 at 63.279 kb on + strand, within H281DRAFT_04660 at 63.279 kb on + strand, within H281DRAFT_04660 at 63.280 kb on - strand, within H281DRAFT_04660 at 63.280 kb on - strand, within H281DRAFT_04660 at 63.566 kb on + strand at 63.567 kb on - strand at 63.971 kb on + strand, within H281DRAFT_04661 at 63.971 kb on + strand, within H281DRAFT_04661 at 63.971 kb on + strand, within H281DRAFT_04661 at 64.002 kb on - strand at 64.002 kb on - strand at 64.004 kb on - strand at 64.004 kb on - strand at 64.178 kb on - strand at 64.252 kb on + strand at 64.252 kb on + strand at 64.253 kb on - strand at 64.253 kb on - strand at 64.625 kb on + strand, within H281DRAFT_04662 at 64.625 kb on + strand, within H281DRAFT_04662 at 64.625 kb on + strand, within H281DRAFT_04662 at 64.749 kb on + strand, within H281DRAFT_04662 at 64.749 kb on + strand, within H281DRAFT_04662 at 64.750 kb on - strand at 64.862 kb on + strand, within H281DRAFT_04662 at 64.862 kb on + strand, within H281DRAFT_04662 at 64.928 kb on - strand at 64.933 kb on - strand at 64.990 kb on + strand at 64.991 kb on - strand at 64.991 kb on - strand at 64.991 kb on - strand at 64.991 kb on - strand at 64.998 kb on + strand at 65.032 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 62,535 - H281DRAFT_04660 0.39 -0.4 62,839 - H281DRAFT_04660 0.58 +0.1 63,017 - H281DRAFT_04660 0.68 +0.4 63,019 + H281DRAFT_04660 0.68 -0.5 63,019 + H281DRAFT_04660 0.68 +0.1 63,019 + H281DRAFT_04660 0.68 +0.6 63,020 - H281DRAFT_04660 0.69 -0.4 63,090 + H281DRAFT_04660 0.73 +0.2 63,218 + H281DRAFT_04660 0.80 +0.3 63,219 - H281DRAFT_04660 0.81 +0.2 63,219 - H281DRAFT_04660 0.81 -0.3 63,279 + H281DRAFT_04660 0.84 +0.3 63,279 + H281DRAFT_04660 0.84 +0.4 63,280 - H281DRAFT_04660 0.84 -1.2 63,280 - H281DRAFT_04660 0.84 -0.5 63,566 + +0.3 63,567 - +0.0 63,971 + H281DRAFT_04661 0.86 -1.6 63,971 + H281DRAFT_04661 0.86 -0.2 63,971 + H281DRAFT_04661 0.86 -0.2 64,002 - +0.2 64,002 - -1.7 64,004 - -0.3 64,004 - +0.7 64,178 - -0.4 64,252 + +0.7 64,252 + +0.1 64,253 - -0.7 64,253 - +0.8 64,625 + H281DRAFT_04662 0.56 -1.0 64,625 + H281DRAFT_04662 0.56 +0.7 64,625 + H281DRAFT_04662 0.56 -0.7 64,749 + H281DRAFT_04662 0.71 -0.4 64,749 + H281DRAFT_04662 0.71 -0.1 64,750 - +3.8 64,862 + H281DRAFT_04662 0.86 +0.2 64,862 + H281DRAFT_04662 0.86 +0.2 64,928 - -0.4 64,933 - -0.4 64,990 + +0.9 64,991 - -0.3 64,991 - -1.2 64,991 - -0.7 64,991 - +0.6 64,998 + -1.7 65,032 + +0.4
Or see this region's nucleotide sequence