Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04640 and H281DRAFT_04641 are separated by 122 nucleotides H281DRAFT_04641 and H281DRAFT_04642 are separated by 370 nucleotides
H281DRAFT_04640: H281DRAFT_04640 - dimethyladenosine transferase, at 41,139 to 41,969
_04640
H281DRAFT_04641: H281DRAFT_04641 - EamA-like transporter family protein, at 42,092 to 43,018
_04641
H281DRAFT_04642: H281DRAFT_04642 - Outer membrane protein (porin), at 43,389 to 44,501
_04642
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1
2
3 at 41.126 kb on + strand at 41.180 kb on + strand at 41.486 kb on - strand at 41.508 kb on + strand, within H281DRAFT_04640 at 41.509 kb on - strand, within H281DRAFT_04640 at 41.665 kb on - strand, within H281DRAFT_04640 at 41.844 kb on - strand, within H281DRAFT_04640 at 41.931 kb on + strand at 41.974 kb on + strand at 42.252 kb on + strand, within H281DRAFT_04641 at 42.282 kb on + strand, within H281DRAFT_04641 at 42.282 kb on + strand, within H281DRAFT_04641 at 42.415 kb on - strand, within H281DRAFT_04641 at 42.415 kb on - strand, within H281DRAFT_04641 at 42.673 kb on + strand, within H281DRAFT_04641 at 42.674 kb on - strand, within H281DRAFT_04641 at 43.197 kb on + strand at 43.197 kb on + strand at 43.197 kb on + strand at 43.198 kb on - strand at 43.252 kb on - strand at 43.252 kb on - strand at 43.289 kb on + strand at 43.307 kb on + strand at 43.375 kb on + strand at 43.645 kb on - strand, within H281DRAFT_04642 at 43.645 kb on - strand, within H281DRAFT_04642 at 43.645 kb on - strand, within H281DRAFT_04642 at 43.645 kb on - strand, within H281DRAFT_04642 at 43.747 kb on - strand, within H281DRAFT_04642 at 43.747 kb on - strand, within H281DRAFT_04642 at 43.775 kb on - strand, within H281DRAFT_04642 at 43.872 kb on + strand, within H281DRAFT_04642 at 43.885 kb on - strand, within H281DRAFT_04642 at 43.942 kb on - strand, within H281DRAFT_04642 at 43.971 kb on + strand, within H281DRAFT_04642 at 43.972 kb on - strand, within H281DRAFT_04642 at 44.011 kb on - strand, within H281DRAFT_04642
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 41,126 + +0.3 41,180 + +1.2 41,486 - +2.8 41,508 + H281DRAFT_04640 0.44 +1.8 41,509 - H281DRAFT_04640 0.45 -0.3 41,665 - H281DRAFT_04640 0.63 -0.1 41,844 - H281DRAFT_04640 0.85 -1.7 41,931 + -0.2 41,974 + +0.4 42,252 + H281DRAFT_04641 0.17 -0.3 42,282 + H281DRAFT_04641 0.20 +0.4 42,282 + H281DRAFT_04641 0.20 +0.4 42,415 - H281DRAFT_04641 0.35 -1.0 42,415 - H281DRAFT_04641 0.35 +0.8 42,673 + H281DRAFT_04641 0.63 +0.1 42,674 - H281DRAFT_04641 0.63 +0.8 43,197 + +0.8 43,197 + -0.6 43,197 + -0.5 43,198 - -0.4 43,252 - +0.8 43,252 - +0.5 43,289 + -0.8 43,307 + +0.2 43,375 + +0.1 43,645 - H281DRAFT_04642 0.23 +0.6 43,645 - H281DRAFT_04642 0.23 -0.1 43,645 - H281DRAFT_04642 0.23 +0.1 43,645 - H281DRAFT_04642 0.23 +0.7 43,747 - H281DRAFT_04642 0.32 -0.4 43,747 - H281DRAFT_04642 0.32 -0.4 43,775 - H281DRAFT_04642 0.35 -0.1 43,872 + H281DRAFT_04642 0.43 +0.6 43,885 - H281DRAFT_04642 0.45 +2.6 43,942 - H281DRAFT_04642 0.50 -0.7 43,971 + H281DRAFT_04642 0.52 +0.1 43,972 - H281DRAFT_04642 0.52 +0.1 44,011 - H281DRAFT_04642 0.56 +1.2
Or see this region's nucleotide sequence