Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04432 and H281DRAFT_04433 are separated by 650 nucleotides H281DRAFT_04433 and H281DRAFT_04434 are separated by 68 nucleotides H281DRAFT_04434 and H281DRAFT_04435 are separated by 73 nucleotides H281DRAFT_04435 and H281DRAFT_04436 are separated by 260 nucleotides
H281DRAFT_04432: H281DRAFT_04432 - Galactose mutarotase, at 149,014 to 149,922
_04432
H281DRAFT_04433: H281DRAFT_04433 - Undecaprenyl-diphosphatase, at 150,573 to 151,403
_04433
H281DRAFT_04434: H281DRAFT_04434 - tRNA_Arg_TCT, at 151,472 to 151,548
_04434
H281DRAFT_04435: H281DRAFT_04435 - Uncharacterized conserved protein, DUF427 family, at 151,622 to 152,005
_04435
H281DRAFT_04436: H281DRAFT_04436 - phospholipase C, at 152,266 to 153,843
_04436
Position (kb) 150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 149.943 kb on - strand at 149.943 kb on - strand at 149.949 kb on + strand at 149.950 kb on - strand at 150.023 kb on + strand at 150.024 kb on - strand at 150.108 kb on + strand at 150.113 kb on - strand at 150.143 kb on - strand at 150.203 kb on + strand at 150.204 kb on - strand at 150.212 kb on + strand at 150.418 kb on + strand at 150.418 kb on + strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.441 kb on + strand at 150.492 kb on + strand at 150.492 kb on + strand at 150.493 kb on - strand at 150.559 kb on - strand at 150.591 kb on - strand at 150.650 kb on + strand at 150.650 kb on + strand at 150.651 kb on - strand at 150.651 kb on - strand at 150.683 kb on + strand, within H281DRAFT_04433 at 150.683 kb on + strand, within H281DRAFT_04433 at 150.787 kb on + strand, within H281DRAFT_04433 at 150.905 kb on - strand, within H281DRAFT_04433 at 151.302 kb on + strand, within H281DRAFT_04433 at 151.405 kb on - strand at 151.600 kb on + strand at 151.600 kb on + strand at 151.624 kb on - strand at 151.685 kb on + strand, within H281DRAFT_04435 at 151.705 kb on - strand, within H281DRAFT_04435 at 151.716 kb on + strand, within H281DRAFT_04435 at 151.716 kb on + strand, within H281DRAFT_04435 at 151.764 kb on + strand, within H281DRAFT_04435 at 151.767 kb on + strand, within H281DRAFT_04435 at 151.767 kb on + strand, within H281DRAFT_04435 at 151.767 kb on + strand, within H281DRAFT_04435 at 151.767 kb on + strand, within H281DRAFT_04435 at 151.851 kb on + strand, within H281DRAFT_04435 at 151.852 kb on - strand, within H281DRAFT_04435 at 151.855 kb on - strand, within H281DRAFT_04435 at 151.867 kb on - strand, within H281DRAFT_04435 at 152.073 kb on - strand at 152.125 kb on + strand at 152.143 kb on - strand at 152.143 kb on - strand at 152.170 kb on + strand at 152.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 149,943 - +2.2 149,943 - -0.6 149,949 + +0.0 149,950 - -0.7 150,023 + -0.6 150,024 - -0.4 150,108 + -0.7 150,113 - +0.4 150,143 - -0.1 150,203 + -0.5 150,204 - -0.3 150,212 + +0.7 150,418 + +0.2 150,418 + -0.4 150,419 - +0.4 150,419 - +0.4 150,419 - +0.2 150,419 - -0.5 150,419 - +0.5 150,419 - +0.2 150,419 - +0.1 150,441 + -0.5 150,492 + +1.7 150,492 + +0.0 150,493 - +0.9 150,559 - +0.5 150,591 - +0.6 150,650 + +0.7 150,650 + +0.6 150,651 - +0.1 150,651 - -0.3 150,683 + H281DRAFT_04433 0.13 +0.4 150,683 + H281DRAFT_04433 0.13 -3.5 150,787 + H281DRAFT_04433 0.26 +0.9 150,905 - H281DRAFT_04433 0.40 +0.6 151,302 + H281DRAFT_04433 0.88 -0.4 151,405 - +0.3 151,600 + -0.8 151,600 + +0.8 151,624 - +0.2 151,685 + H281DRAFT_04435 0.16 +0.6 151,705 - H281DRAFT_04435 0.22 +0.4 151,716 + H281DRAFT_04435 0.24 +0.1 151,716 + H281DRAFT_04435 0.24 -0.4 151,764 + H281DRAFT_04435 0.37 +0.6 151,767 + H281DRAFT_04435 0.38 +0.7 151,767 + H281DRAFT_04435 0.38 -0.6 151,767 + H281DRAFT_04435 0.38 -0.1 151,767 + H281DRAFT_04435 0.38 -1.1 151,851 + H281DRAFT_04435 0.60 -0.2 151,852 - H281DRAFT_04435 0.60 -0.4 151,855 - H281DRAFT_04435 0.61 +2.4 151,867 - H281DRAFT_04435 0.64 -1.9 152,073 - +0.1 152,125 + -0.2 152,143 - -0.4 152,143 - +0.8 152,170 + +1.0 152,242 - -0.2
Or see this region's nucleotide sequence