Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04286 and H281DRAFT_04287 are separated by 116 nucleotides H281DRAFT_04287 and H281DRAFT_04288 are separated by 165 nucleotides H281DRAFT_04288 and H281DRAFT_04289 are separated by 85 nucleotides
H281DRAFT_04286: H281DRAFT_04286 - hypothetical protein, at 1,320 to 3,110
_04286
H281DRAFT_04287: H281DRAFT_04287 - D-amino-acid dehydrogenase, at 3,227 to 4,543
_04287
H281DRAFT_04288: H281DRAFT_04288 - transcriptional regulator, AsnC family, at 4,709 to 5,209
_04288
H281DRAFT_04289: H281DRAFT_04289 - DNA repair photolyase, at 5,295 to 6,440
_04289
Position (kb) 3
4
5 Strain fitness (log2 ratio) -1
0
1 at 2.253 kb on + strand, within H281DRAFT_04286 at 2.287 kb on + strand, within H281DRAFT_04286 at 2.288 kb on - strand, within H281DRAFT_04286 at 2.406 kb on + strand, within H281DRAFT_04286 at 2.407 kb on - strand, within H281DRAFT_04286 at 2.481 kb on + strand, within H281DRAFT_04286 at 2.482 kb on - strand, within H281DRAFT_04286 at 2.516 kb on + strand, within H281DRAFT_04286 at 2.517 kb on - strand, within H281DRAFT_04286 at 2.517 kb on - strand, within H281DRAFT_04286 at 2.631 kb on + strand, within H281DRAFT_04286 at 2.787 kb on + strand, within H281DRAFT_04286 at 2.867 kb on - strand, within H281DRAFT_04286 at 2.867 kb on - strand, within H281DRAFT_04286 at 3.009 kb on + strand at 3.009 kb on + strand at 3.009 kb on + strand at 3.010 kb on - strand at 3.010 kb on - strand at 3.124 kb on + strand at 3.138 kb on + strand at 3.159 kb on - strand at 3.159 kb on - strand at 3.159 kb on - strand at 3.265 kb on - strand at 3.309 kb on - strand at 3.352 kb on + strand at 3.352 kb on + strand at 3.352 kb on + strand at 3.476 kb on - strand, within H281DRAFT_04287 at 3.655 kb on - strand, within H281DRAFT_04287 at 3.655 kb on - strand, within H281DRAFT_04287 at 3.735 kb on + strand, within H281DRAFT_04287 at 3.777 kb on + strand, within H281DRAFT_04287 at 4.054 kb on - strand, within H281DRAFT_04287 at 4.156 kb on - strand, within H281DRAFT_04287 at 4.203 kb on + strand, within H281DRAFT_04287 at 4.203 kb on + strand, within H281DRAFT_04287 at 4.203 kb on + strand, within H281DRAFT_04287 at 4.242 kb on + strand, within H281DRAFT_04287 at 4.494 kb on + strand at 4.495 kb on - strand at 4.495 kb on - strand at 4.495 kb on - strand at 4.543 kb on + strand at 4.544 kb on - strand at 4.544 kb on - strand at 4.589 kb on + strand at 4.649 kb on + strand at 4.650 kb on - strand at 4.650 kb on - strand at 4.650 kb on - strand at 4.652 kb on + strand at 4.652 kb on + strand at 4.652 kb on + strand at 4.652 kb on + strand at 4.653 kb on - strand at 4.676 kb on + strand at 4.676 kb on + strand at 4.714 kb on + strand at 4.714 kb on + strand at 4.715 kb on - strand at 4.889 kb on + strand, within H281DRAFT_04288 at 4.890 kb on - strand, within H281DRAFT_04288 at 4.890 kb on - strand, within H281DRAFT_04288 at 4.932 kb on + strand, within H281DRAFT_04288 at 5.049 kb on - strand, within H281DRAFT_04288 at 5.049 kb on - strand, within H281DRAFT_04288 at 5.144 kb on + strand, within H281DRAFT_04288 at 5.144 kb on + strand, within H281DRAFT_04288 at 5.145 kb on - strand, within H281DRAFT_04288 at 5.207 kb on + strand at 5.207 kb on + strand at 5.208 kb on - strand at 5.280 kb on - strand at 5.280 kb on - strand at 5.291 kb on - strand at 5.416 kb on + strand, within H281DRAFT_04289 at 5.471 kb on + strand, within H281DRAFT_04289 at 5.472 kb on - strand, within H281DRAFT_04289 at 5.472 kb on - strand, within H281DRAFT_04289 at 5.472 kb on - strand, within H281DRAFT_04289 at 5.516 kb on + strand, within H281DRAFT_04289 at 5.516 kb on + strand, within H281DRAFT_04289 at 5.516 kb on + strand, within H281DRAFT_04289 at 5.516 kb on + strand, within H281DRAFT_04289 at 5.517 kb on - strand, within H281DRAFT_04289 at 5.517 kb on - strand, within H281DRAFT_04289 at 5.517 kb on - strand, within H281DRAFT_04289 at 5.517 kb on - strand, within H281DRAFT_04289
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 2,253 + H281DRAFT_04286 0.52 +0.2 2,287 + H281DRAFT_04286 0.54 -0.0 2,288 - H281DRAFT_04286 0.54 -0.1 2,406 + H281DRAFT_04286 0.61 -0.1 2,407 - H281DRAFT_04286 0.61 -0.2 2,481 + H281DRAFT_04286 0.65 -0.2 2,482 - H281DRAFT_04286 0.65 -0.4 2,516 + H281DRAFT_04286 0.67 -0.1 2,517 - H281DRAFT_04286 0.67 -1.6 2,517 - H281DRAFT_04286 0.67 +0.4 2,631 + H281DRAFT_04286 0.73 +0.2 2,787 + H281DRAFT_04286 0.82 +0.3 2,867 - H281DRAFT_04286 0.86 +0.3 2,867 - H281DRAFT_04286 0.86 -0.6 3,009 + -0.7 3,009 + +0.0 3,009 + +0.2 3,010 - -0.4 3,010 - +0.1 3,124 + -0.3 3,138 + -0.6 3,159 - -0.7 3,159 - -0.4 3,159 - -0.1 3,265 - +0.6 3,309 - +0.3 3,352 + +0.2 3,352 + +0.0 3,352 + -0.3 3,476 - H281DRAFT_04287 0.19 +0.0 3,655 - H281DRAFT_04287 0.32 -1.3 3,655 - H281DRAFT_04287 0.32 -1.6 3,735 + H281DRAFT_04287 0.39 -1.1 3,777 + H281DRAFT_04287 0.42 -0.1 4,054 - H281DRAFT_04287 0.63 -0.0 4,156 - H281DRAFT_04287 0.71 -0.5 4,203 + H281DRAFT_04287 0.74 +0.5 4,203 + H281DRAFT_04287 0.74 -0.4 4,203 + H281DRAFT_04287 0.74 +1.1 4,242 + H281DRAFT_04287 0.77 -0.3 4,494 + -0.7 4,495 - -1.4 4,495 - -0.6 4,495 - +0.9 4,543 + +0.6 4,544 - -0.2 4,544 - -0.5 4,589 + -1.0 4,649 + +0.6 4,650 - +0.4 4,650 - +0.9 4,650 - +0.4 4,652 + -0.3 4,652 + +0.4 4,652 + -0.2 4,652 + -0.1 4,653 - +0.3 4,676 + +1.0 4,676 + -1.0 4,714 + +0.7 4,714 + -1.3 4,715 - +0.1 4,889 + H281DRAFT_04288 0.36 +1.1 4,890 - H281DRAFT_04288 0.36 -0.3 4,890 - H281DRAFT_04288 0.36 +0.6 4,932 + H281DRAFT_04288 0.45 +0.0 5,049 - H281DRAFT_04288 0.68 -0.2 5,049 - H281DRAFT_04288 0.68 +0.3 5,144 + H281DRAFT_04288 0.87 +0.9 5,144 + H281DRAFT_04288 0.87 +0.4 5,145 - H281DRAFT_04288 0.87 +0.5 5,207 + -0.6 5,207 + +0.1 5,208 - -0.3 5,280 - -0.0 5,280 - -0.8 5,291 - +0.7 5,416 + H281DRAFT_04289 0.11 +0.5 5,471 + H281DRAFT_04289 0.15 +0.3 5,472 - H281DRAFT_04289 0.15 -0.8 5,472 - H281DRAFT_04289 0.15 -0.9 5,472 - H281DRAFT_04289 0.15 +0.4 5,516 + H281DRAFT_04289 0.19 +0.0 5,516 + H281DRAFT_04289 0.19 +0.0 5,516 + H281DRAFT_04289 0.19 -0.3 5,516 + H281DRAFT_04289 0.19 -0.0 5,517 - H281DRAFT_04289 0.19 +0.4 5,517 - H281DRAFT_04289 0.19 +0.0 5,517 - H281DRAFT_04289 0.19 +0.0 5,517 - H281DRAFT_04289 0.19 +0.4
Or see this region's nucleotide sequence