Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03411 and H281DRAFT_03412 are separated by 99 nucleotides H281DRAFT_03412 and H281DRAFT_03413 are separated by 374 nucleotides H281DRAFT_03413 and H281DRAFT_03414 are separated by 154 nucleotides H281DRAFT_03414 and H281DRAFT_03415 are separated by 121 nucleotides
H281DRAFT_03411: H281DRAFT_03411 - hypothetical protein, at 481,750 to 482,340
_03411
H281DRAFT_03412: H281DRAFT_03412 - Glycine-zipper containing OmpA-like membrane domain-containing protein, at 482,440 to 482,913
_03412
H281DRAFT_03413: H281DRAFT_03413 - high affinity sulphate transporter 1, at 483,288 to 485,081
_03413
H281DRAFT_03414: H281DRAFT_03414 - outer membrane surface antigen, at 485,236 to 485,766
_03414
H281DRAFT_03415: H281DRAFT_03415 - polyphosphate kinase 2, PA0141 family, at 485,888 to 486,703
_03415
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 482.867 kb on - strand at 482.867 kb on - strand at 483.195 kb on + strand at 483.195 kb on + strand at 483.501 kb on + strand, within H281DRAFT_03413 at 483.501 kb on + strand, within H281DRAFT_03413 at 483.501 kb on + strand, within H281DRAFT_03413 at 483.502 kb on - strand, within H281DRAFT_03413 at 483.866 kb on + strand, within H281DRAFT_03413 at 483.870 kb on - strand, within H281DRAFT_03413 at 483.870 kb on - strand, within H281DRAFT_03413 at 483.917 kb on - strand, within H281DRAFT_03413 at 483.917 kb on - strand at 484.670 kb on + strand, within H281DRAFT_03413 at 484.671 kb on - strand, within H281DRAFT_03413 at 484.876 kb on + strand, within H281DRAFT_03413 at 484.876 kb on + strand, within H281DRAFT_03413 at 484.988 kb on - strand at 485.189 kb on + strand at 485.197 kb on - strand at 485.626 kb on - strand, within H281DRAFT_03414 at 485.802 kb on + strand at 485.802 kb on + strand at 485.804 kb on + strand at 486.017 kb on - strand, within H281DRAFT_03415
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 482,867 - -0.2 482,867 - -0.2 483,195 + -0.4 483,195 + -0.6 483,501 + H281DRAFT_03413 0.12 -2.8 483,501 + H281DRAFT_03413 0.12 -0.2 483,501 + H281DRAFT_03413 0.12 +0.4 483,502 - H281DRAFT_03413 0.12 -1.2 483,866 + H281DRAFT_03413 0.32 -0.4 483,870 - H281DRAFT_03413 0.32 -2.0 483,870 - H281DRAFT_03413 0.32 -0.8 483,917 - H281DRAFT_03413 0.35 -0.3 483,917 - +1.5 484,670 + H281DRAFT_03413 0.77 +0.5 484,671 - H281DRAFT_03413 0.77 +2.5 484,876 + H281DRAFT_03413 0.89 +0.6 484,876 + H281DRAFT_03413 0.89 -1.3 484,988 - -0.4 485,189 + -0.4 485,197 - -0.0 485,626 - H281DRAFT_03414 0.73 -1.5 485,802 + -0.9 485,802 + +0.8 485,804 + -0.1 486,017 - H281DRAFT_03415 0.16 +0.6
Or see this region's nucleotide sequence