Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03403 and H281DRAFT_03404 are separated by 22 nucleotides H281DRAFT_03404 and H281DRAFT_03405 are separated by 92 nucleotides H281DRAFT_03405 and H281DRAFT_03406 are separated by 573 nucleotides
H281DRAFT_03403: H281DRAFT_03403 - Predicted ATPase, at 472,661 to 474,166
_03403
H281DRAFT_03404: H281DRAFT_03404 - Response regulator, at 474,189 to 474,563
_03404
H281DRAFT_03405: H281DRAFT_03405 - catalase, at 474,656 to 476,119
_03405
H281DRAFT_03406: H281DRAFT_03406 - Protein of unknown function (DUF3455), at 476,693 to 477,208
_03406
Position (kb) 474
475
476
477 Strain fitness (log2 ratio) -1
0
1 at 474.636 kb on + strand at 474.873 kb on + strand, within H281DRAFT_03405 at 475.036 kb on - strand, within H281DRAFT_03405 at 475.036 kb on - strand, within H281DRAFT_03405 at 475.555 kb on + strand, within H281DRAFT_03405 at 475.556 kb on - strand, within H281DRAFT_03405 at 475.556 kb on - strand, within H281DRAFT_03405 at 475.556 kb on - strand, within H281DRAFT_03405 at 475.556 kb on - strand, within H281DRAFT_03405 at 475.804 kb on + strand, within H281DRAFT_03405 at 475.906 kb on + strand, within H281DRAFT_03405 at 475.908 kb on + strand, within H281DRAFT_03405 at 475.969 kb on + strand, within H281DRAFT_03405 at 476.124 kb on + strand at 476.125 kb on - strand at 476.456 kb on - strand at 476.480 kb on - strand at 476.482 kb on - strand at 476.849 kb on + strand, within H281DRAFT_03406 at 476.915 kb on + strand, within H281DRAFT_03406 at 476.916 kb on - strand, within H281DRAFT_03406
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 474,636 + -0.7 474,873 + H281DRAFT_03405 0.15 +0.2 475,036 - H281DRAFT_03405 0.26 -0.1 475,036 - H281DRAFT_03405 0.26 -0.2 475,555 + H281DRAFT_03405 0.61 -1.5 475,556 - H281DRAFT_03405 0.61 -0.3 475,556 - H281DRAFT_03405 0.61 +0.2 475,556 - H281DRAFT_03405 0.61 -0.3 475,556 - H281DRAFT_03405 0.61 +0.4 475,804 + H281DRAFT_03405 0.78 -0.0 475,906 + H281DRAFT_03405 0.85 -1.0 475,908 + H281DRAFT_03405 0.86 +0.1 475,969 + H281DRAFT_03405 0.90 -0.1 476,124 + -0.6 476,125 - +0.6 476,456 - +0.2 476,480 - -1.5 476,482 - -0.7 476,849 + H281DRAFT_03406 0.30 +0.5 476,915 + H281DRAFT_03406 0.43 -0.5 476,916 - H281DRAFT_03406 0.43 +1.5
Or see this region's nucleotide sequence