Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03280

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03279 and H281DRAFT_03280 overlap by 22 nucleotidesH281DRAFT_03280 and H281DRAFT_03281 are separated by 57 nucleotides H281DRAFT_03279: H281DRAFT_03279 - ATP-dependent DNA helicase RecQ, at 335,393 to 337,114 _03279 H281DRAFT_03280: H281DRAFT_03280 - UDP-glucuronate decarboxylase, at 337,093 to 338,112 _03280 H281DRAFT_03281: H281DRAFT_03281 - Glycosyltransferase, at 338,170 to 339,126 _03281 Position (kb) 337 338 339Strain fitness (log2 ratio) -1 0 1 2at 336.315 kb on + strand, within H281DRAFT_03279at 336.316 kb on - strand, within H281DRAFT_03279at 336.360 kb on - strand, within H281DRAFT_03279at 336.360 kb on - strand, within H281DRAFT_03279at 336.360 kb on - strand, within H281DRAFT_03279at 337.457 kb on + strand, within H281DRAFT_03280at 337.574 kb on + strand, within H281DRAFT_03280at 337.707 kb on - strand, within H281DRAFT_03280at 337.743 kb on - strand, within H281DRAFT_03280at 337.857 kb on - strand, within H281DRAFT_03280at 337.888 kb on - strand, within H281DRAFT_03280at 338.101 kb on - strandat 338.588 kb on - strand, within H281DRAFT_03281at 338.886 kb on - strand, within H281DRAFT_03281at 339.062 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
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336,315 + H281DRAFT_03279 0.54 -0.4
336,316 - H281DRAFT_03279 0.54 -0.6
336,360 - H281DRAFT_03279 0.56 +0.6
336,360 - H281DRAFT_03279 0.56 +0.2
336,360 - H281DRAFT_03279 0.56 +0.2
337,457 + H281DRAFT_03280 0.36 -0.8
337,574 + H281DRAFT_03280 0.47 +0.1
337,707 - H281DRAFT_03280 0.60 -0.3
337,743 - H281DRAFT_03280 0.64 -0.6
337,857 - H281DRAFT_03280 0.75 -0.2
337,888 - H281DRAFT_03280 0.78 -0.8
338,101 - -1.0
338,588 - H281DRAFT_03281 0.44 -0.1
338,886 - H281DRAFT_03281 0.75 -0.9
339,062 + +2.1

Or see this region's nucleotide sequence