Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03134 and H281DRAFT_03135 are separated by 141 nucleotides H281DRAFT_03135 and H281DRAFT_03136 are separated by 10 nucleotides
H281DRAFT_03134: H281DRAFT_03134 - Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily, at 169,975 to 171,384
_03134
H281DRAFT_03135: H281DRAFT_03135 - Uncharacterized conserved protein, Alpha-E superfamily, at 171,526 to 172,476
_03135
H281DRAFT_03136: H281DRAFT_03136 - Transglutaminase-like enzyme, putative cysteine protease, at 172,487 to 173,287
_03136
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 170.528 kb on + strand, within H281DRAFT_03134 at 170.628 kb on - strand, within H281DRAFT_03134 at 170.644 kb on + strand, within H281DRAFT_03134 at 170.645 kb on - strand, within H281DRAFT_03134 at 170.734 kb on + strand, within H281DRAFT_03134 at 170.734 kb on + strand, within H281DRAFT_03134 at 170.734 kb on + strand, within H281DRAFT_03134 at 170.735 kb on - strand, within H281DRAFT_03134 at 170.735 kb on - strand, within H281DRAFT_03134 at 170.735 kb on - strand, within H281DRAFT_03134 at 170.735 kb on - strand, within H281DRAFT_03134 at 170.783 kb on - strand, within H281DRAFT_03134 at 170.938 kb on + strand, within H281DRAFT_03134 at 171.169 kb on + strand, within H281DRAFT_03134 at 171.170 kb on - strand at 171.170 kb on - strand, within H281DRAFT_03134 at 171.442 kb on - strand at 171.463 kb on - strand at 171.512 kb on + strand at 171.531 kb on - strand at 171.568 kb on + strand at 171.569 kb on - strand at 171.569 kb on - strand at 171.864 kb on + strand, within H281DRAFT_03135 at 171.864 kb on + strand, within H281DRAFT_03135 at 171.865 kb on - strand, within H281DRAFT_03135 at 171.865 kb on - strand, within H281DRAFT_03135 at 171.865 kb on - strand, within H281DRAFT_03135 at 172.124 kb on - strand, within H281DRAFT_03135 at 172.127 kb on - strand, within H281DRAFT_03135 at 172.454 kb on - strand at 172.454 kb on - strand at 172.486 kb on + strand at 172.486 kb on + strand at 172.486 kb on + strand at 172.487 kb on - strand at 172.487 kb on - strand at 172.487 kb on - strand at 172.487 kb on - strand at 172.646 kb on + strand, within H281DRAFT_03136 at 172.663 kb on + strand, within H281DRAFT_03136 at 172.664 kb on - strand, within H281DRAFT_03136 at 172.688 kb on - strand, within H281DRAFT_03136 at 172.910 kb on + strand, within H281DRAFT_03136 at 172.911 kb on - strand, within H281DRAFT_03136 at 173.048 kb on + strand, within H281DRAFT_03136 at 173.049 kb on - strand, within H281DRAFT_03136 at 173.192 kb on + strand, within H281DRAFT_03136 at 173.325 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 170,528 + H281DRAFT_03134 0.39 +0.5 170,628 - H281DRAFT_03134 0.46 +1.3 170,644 + H281DRAFT_03134 0.47 -0.4 170,645 - H281DRAFT_03134 0.48 -0.4 170,734 + H281DRAFT_03134 0.54 -0.6 170,734 + H281DRAFT_03134 0.54 -0.4 170,734 + H281DRAFT_03134 0.54 -1.2 170,735 - H281DRAFT_03134 0.54 +0.8 170,735 - H281DRAFT_03134 0.54 +0.2 170,735 - H281DRAFT_03134 0.54 -0.1 170,735 - H281DRAFT_03134 0.54 +0.0 170,783 - H281DRAFT_03134 0.57 -0.3 170,938 + H281DRAFT_03134 0.68 +0.2 171,169 + H281DRAFT_03134 0.85 -0.0 171,170 - -0.3 171,170 - H281DRAFT_03134 0.85 -0.2 171,442 - +0.7 171,463 - +0.5 171,512 + +0.3 171,531 - -0.1 171,568 + -0.3 171,569 - +0.1 171,569 - -0.4 171,864 + H281DRAFT_03135 0.36 +0.9 171,864 + H281DRAFT_03135 0.36 +0.1 171,865 - H281DRAFT_03135 0.36 -0.0 171,865 - H281DRAFT_03135 0.36 -0.3 171,865 - H281DRAFT_03135 0.36 +1.1 172,124 - H281DRAFT_03135 0.63 +1.0 172,127 - H281DRAFT_03135 0.63 -1.8 172,454 - +0.5 172,454 - +0.3 172,486 + -0.5 172,486 + +0.7 172,486 + -0.6 172,487 - +0.3 172,487 - +0.4 172,487 - +0.5 172,487 - -0.2 172,646 + H281DRAFT_03136 0.20 -1.5 172,663 + H281DRAFT_03136 0.22 +0.9 172,664 - H281DRAFT_03136 0.22 +1.3 172,688 - H281DRAFT_03136 0.25 -0.9 172,910 + H281DRAFT_03136 0.53 -0.0 172,911 - H281DRAFT_03136 0.53 -0.4 173,048 + H281DRAFT_03136 0.70 -1.0 173,049 - H281DRAFT_03136 0.70 -1.6 173,192 + H281DRAFT_03136 0.88 -0.7 173,325 + -0.5
Or see this region's nucleotide sequence