Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03097 and H281DRAFT_03098 are separated by 140 nucleotides H281DRAFT_03098 and H281DRAFT_03099 are separated by 16 nucleotides H281DRAFT_03099 and H281DRAFT_03100 are separated by 2 nucleotides H281DRAFT_03100 and H281DRAFT_03101 are separated by 127 nucleotides
H281DRAFT_03097: H281DRAFT_03097 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 130,579 to 132,015
_03097
H281DRAFT_03098: H281DRAFT_03098 - Uncharacterized conserved protein, at 132,156 to 132,701
_03098
H281DRAFT_03099: H281DRAFT_03099 - H+/Cl- antiporter ClcA, at 132,718 to 134,517
_03099
H281DRAFT_03100: H281DRAFT_03100 - DNA-binding transcriptional regulator, MarR family, at 134,520 to 134,936
_03100
H281DRAFT_03101: H281DRAFT_03101 - CBS domain-containing membrane protein, at 135,064 to 136,230
_03101
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.720 kb on + strand at 131.766 kb on - strand, within H281DRAFT_03097 at 131.833 kb on + strand, within H281DRAFT_03097 at 131.885 kb on - strand at 131.948 kb on + strand at 131.950 kb on + strand at 132.021 kb on + strand at 132.021 kb on + strand at 132.568 kb on - strand, within H281DRAFT_03098 at 133.230 kb on - strand, within H281DRAFT_03099 at 133.310 kb on - strand, within H281DRAFT_03099 at 133.527 kb on + strand, within H281DRAFT_03099 at 133.814 kb on - strand, within H281DRAFT_03099 at 133.952 kb on - strand, within H281DRAFT_03099 at 134.319 kb on + strand, within H281DRAFT_03099 at 134.319 kb on + strand, within H281DRAFT_03099 at 134.807 kb on - strand, within H281DRAFT_03100 at 134.820 kb on - strand, within H281DRAFT_03100 at 134.910 kb on - strand at 135.307 kb on + strand, within H281DRAFT_03101 at 135.309 kb on + strand, within H281DRAFT_03101 at 135.311 kb on + strand, within H281DRAFT_03101 at 135.311 kb on + strand, within H281DRAFT_03101 at 135.312 kb on - strand, within H281DRAFT_03101 at 135.312 kb on - strand, within H281DRAFT_03101
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 131,720 + +2.0 131,766 - H281DRAFT_03097 0.83 -2.3 131,833 + H281DRAFT_03097 0.87 +2.2 131,885 - -0.1 131,948 + -0.3 131,950 + -0.3 132,021 + -0.4 132,021 + +1.8 132,568 - H281DRAFT_03098 0.75 +0.6 133,230 - H281DRAFT_03099 0.28 +0.6 133,310 - H281DRAFT_03099 0.33 +0.5 133,527 + H281DRAFT_03099 0.45 -0.1 133,814 - H281DRAFT_03099 0.61 +1.0 133,952 - H281DRAFT_03099 0.69 +0.8 134,319 + H281DRAFT_03099 0.89 +0.2 134,319 + H281DRAFT_03099 0.89 +0.3 134,807 - H281DRAFT_03100 0.69 +0.7 134,820 - H281DRAFT_03100 0.72 -0.1 134,910 - -1.3 135,307 + H281DRAFT_03101 0.21 +0.4 135,309 + H281DRAFT_03101 0.21 -0.5 135,311 + H281DRAFT_03101 0.21 +0.5 135,311 + H281DRAFT_03101 0.21 +1.1 135,312 - H281DRAFT_03101 0.21 +0.1 135,312 - H281DRAFT_03101 0.21 +0.4
Or see this region's nucleotide sequence