Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03052 and H281DRAFT_03053 are separated by 174 nucleotides H281DRAFT_03053 and H281DRAFT_03054 are separated by 781 nucleotides
H281DRAFT_03052: H281DRAFT_03052 - L-threonine aldolase, at 81,008 to 82,015
_03052
H281DRAFT_03053: H281DRAFT_03053 - MFS transporter, DHA2 family, multidrug resistance protein, at 82,190 to 83,557
_03053
H281DRAFT_03054: H281DRAFT_03054 - glycogen phosphorylase, at 84,339 to 86,792
_03054
Position (kb) 82
83
84 Strain fitness (log2 ratio) -2
-1
0
1 at 81.233 kb on + strand, within H281DRAFT_03052 at 81.261 kb on - strand, within H281DRAFT_03052 at 81.266 kb on + strand, within H281DRAFT_03052 at 81.267 kb on - strand, within H281DRAFT_03052 at 81.449 kb on + strand, within H281DRAFT_03052 at 81.450 kb on - strand, within H281DRAFT_03052 at 81.450 kb on - strand, within H281DRAFT_03052 at 81.450 kb on - strand, within H281DRAFT_03052 at 81.450 kb on - strand, within H281DRAFT_03052 at 81.725 kb on + strand, within H281DRAFT_03052 at 81.725 kb on + strand, within H281DRAFT_03052 at 81.910 kb on + strand, within H281DRAFT_03052 at 81.911 kb on - strand, within H281DRAFT_03052 at 81.911 kb on - strand, within H281DRAFT_03052 at 81.923 kb on + strand at 81.924 kb on - strand at 82.143 kb on + strand at 82.144 kb on - strand at 82.532 kb on + strand, within H281DRAFT_03053 at 82.697 kb on + strand, within H281DRAFT_03053 at 82.697 kb on + strand, within H281DRAFT_03053 at 82.698 kb on - strand, within H281DRAFT_03053 at 82.698 kb on - strand, within H281DRAFT_03053 at 82.698 kb on - strand, within H281DRAFT_03053 at 83.311 kb on + strand, within H281DRAFT_03053 at 83.687 kb on + strand at 83.823 kb on - strand at 83.923 kb on + strand at 83.923 kb on + strand at 84.162 kb on + strand at 84.163 kb on - strand at 84.235 kb on + strand at 84.246 kb on - strand at 84.420 kb on + strand at 84.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 81,233 + H281DRAFT_03052 0.22 -1.4 81,261 - H281DRAFT_03052 0.25 -0.7 81,266 + H281DRAFT_03052 0.26 -0.1 81,267 - H281DRAFT_03052 0.26 -1.6 81,449 + H281DRAFT_03052 0.44 +0.4 81,450 - H281DRAFT_03052 0.44 -0.2 81,450 - H281DRAFT_03052 0.44 -1.6 81,450 - H281DRAFT_03052 0.44 -2.4 81,450 - H281DRAFT_03052 0.44 -1.0 81,725 + H281DRAFT_03052 0.71 -0.9 81,725 + H281DRAFT_03052 0.71 -1.0 81,910 + H281DRAFT_03052 0.89 -0.0 81,911 - H281DRAFT_03052 0.90 -0.4 81,911 - H281DRAFT_03052 0.90 -0.4 81,923 + -0.3 81,924 - -0.7 82,143 + +0.5 82,144 - -0.2 82,532 + H281DRAFT_03053 0.25 -0.3 82,697 + H281DRAFT_03053 0.37 +0.1 82,697 + H281DRAFT_03053 0.37 -0.5 82,698 - H281DRAFT_03053 0.37 -1.3 82,698 - H281DRAFT_03053 0.37 -0.5 82,698 - H281DRAFT_03053 0.37 -0.1 83,311 + H281DRAFT_03053 0.82 -1.0 83,687 + -0.4 83,823 - -0.8 83,923 + +0.4 83,923 + -0.6 84,162 + +0.3 84,163 - +0.5 84,235 + -0.6 84,246 - +0.8 84,420 + +0.2 84,421 - -2.1
Or see this region's nucleotide sequence