Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02568 and H281DRAFT_02569 are separated by 562 nucleotides H281DRAFT_02569 and H281DRAFT_02570 are separated by 40 nucleotides
H281DRAFT_02568: H281DRAFT_02568 - Methyl-accepting chemotaxis protein, at 143,507 to 144,529
_02568
H281DRAFT_02569: H281DRAFT_02569 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 145,092 to 145,451
_02569
H281DRAFT_02570: H281DRAFT_02570 - transcriptional regulator, IclR family, at 145,492 to 146,298
_02570
Position (kb) 145
146 Strain fitness (log2 ratio) -1
0
1 at 144.420 kb on - strand, within H281DRAFT_02568 at 144.450 kb on - strand at 144.450 kb on - strand at 144.494 kb on + strand at 144.666 kb on + strand at 144.667 kb on - strand at 144.667 kb on - strand at 144.790 kb on - strand at 144.825 kb on + strand at 144.832 kb on + strand at 144.854 kb on + strand at 145.223 kb on + strand, within H281DRAFT_02569 at 145.294 kb on + strand, within H281DRAFT_02569 at 145.295 kb on - strand, within H281DRAFT_02569 at 145.850 kb on + strand, within H281DRAFT_02570 at 145.851 kb on - strand, within H281DRAFT_02570 at 145.851 kb on - strand, within H281DRAFT_02570 at 145.920 kb on - strand, within H281DRAFT_02570 at 146.030 kb on + strand, within H281DRAFT_02570 at 146.099 kb on + strand, within H281DRAFT_02570 at 146.121 kb on - strand, within H281DRAFT_02570 at 146.121 kb on - strand, within H281DRAFT_02570 at 146.322 kb on + strand at 146.322 kb on + strand at 146.323 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 144,420 - H281DRAFT_02568 0.89 +0.1 144,450 - +1.3 144,450 - +1.1 144,494 + -0.6 144,666 + +0.8 144,667 - +0.5 144,667 - -0.1 144,790 - +0.9 144,825 + +0.2 144,832 + +0.5 144,854 + -0.3 145,223 + H281DRAFT_02569 0.36 +1.0 145,294 + H281DRAFT_02569 0.56 -0.1 145,295 - H281DRAFT_02569 0.56 +0.2 145,850 + H281DRAFT_02570 0.44 +0.6 145,851 - H281DRAFT_02570 0.44 -0.2 145,851 - H281DRAFT_02570 0.44 +0.0 145,920 - H281DRAFT_02570 0.53 -0.0 146,030 + H281DRAFT_02570 0.67 +0.2 146,099 + H281DRAFT_02570 0.75 +0.9 146,121 - H281DRAFT_02570 0.78 +0.5 146,121 - H281DRAFT_02570 0.78 +0.4 146,322 + +0.5 146,322 + +0.1 146,323 - +0.2
Or see this region's nucleotide sequence