Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02276 and H281DRAFT_02277 are separated by 114 nucleotides H281DRAFT_02277 and H281DRAFT_02278 are separated by 236 nucleotides H281DRAFT_02278 and H281DRAFT_02279 are separated by 209 nucleotides
H281DRAFT_02276: H281DRAFT_02276 - ParB-like nuclease domain-containing protein, at 421,771 to 422,670
_02276
H281DRAFT_02277: H281DRAFT_02277 - hypothetical protein, at 422,785 to 423,126
_02277
H281DRAFT_02278: H281DRAFT_02278 - Protein of unknown function (DUF3296), at 423,363 to 424,607
_02278
H281DRAFT_02279: H281DRAFT_02279 - Protein of unknown function (DUF3987), at 424,817 to 426,265
_02279
Position (kb) 423
424
425 Strain fitness (log2 ratio) -1
0
1
2
3 at 422.500 kb on - strand, within H281DRAFT_02276 at 422.647 kb on - strand at 422.668 kb on + strand at 422.712 kb on + strand at 422.713 kb on - strand at 422.713 kb on - strand at 422.770 kb on + strand at 423.120 kb on + strand at 423.120 kb on + strand at 423.164 kb on + strand at 423.164 kb on + strand at 423.164 kb on + strand at 423.324 kb on + strand at 423.324 kb on + strand at 423.325 kb on - strand at 423.478 kb on + strand at 423.520 kb on + strand, within H281DRAFT_02278 at 423.521 kb on - strand, within H281DRAFT_02278 at 423.544 kb on + strand, within H281DRAFT_02278 at 423.561 kb on - strand, within H281DRAFT_02278 at 423.573 kb on - strand, within H281DRAFT_02278 at 423.601 kb on - strand, within H281DRAFT_02278 at 423.950 kb on - strand, within H281DRAFT_02278 at 423.982 kb on + strand, within H281DRAFT_02278 at 423.982 kb on + strand, within H281DRAFT_02278 at 423.983 kb on - strand, within H281DRAFT_02278 at 424.097 kb on - strand, within H281DRAFT_02278 at 424.460 kb on + strand, within H281DRAFT_02278 at 424.461 kb on - strand, within H281DRAFT_02278 at 424.532 kb on + strand at 424.601 kb on + strand at 424.602 kb on - strand at 424.630 kb on + strand at 424.636 kb on - strand at 424.639 kb on - strand at 424.643 kb on - strand at 424.690 kb on + strand at 424.697 kb on - strand at 424.830 kb on + strand at 424.831 kb on - strand at 424.842 kb on + strand at 424.890 kb on + strand at 425.101 kb on - strand, within H281DRAFT_02279 at 425.101 kb on - strand, within H281DRAFT_02279 at 425.281 kb on - strand, within H281DRAFT_02279
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 422,500 - H281DRAFT_02276 0.81 +0.0 422,647 - -0.1 422,668 + +0.2 422,712 + -0.3 422,713 - -0.5 422,713 - +3.3 422,770 + +0.5 423,120 + +0.6 423,120 + +0.4 423,164 + -0.6 423,164 + -0.4 423,164 + -0.0 423,324 + +1.7 423,324 + +1.0 423,325 - -1.0 423,478 + -0.3 423,520 + H281DRAFT_02278 0.13 -0.3 423,521 - H281DRAFT_02278 0.13 -0.1 423,544 + H281DRAFT_02278 0.15 +0.2 423,561 - H281DRAFT_02278 0.16 +0.0 423,573 - H281DRAFT_02278 0.17 -0.6 423,601 - H281DRAFT_02278 0.19 -0.2 423,950 - H281DRAFT_02278 0.47 +0.3 423,982 + H281DRAFT_02278 0.50 +0.1 423,982 + H281DRAFT_02278 0.50 -0.1 423,983 - H281DRAFT_02278 0.50 +1.4 424,097 - H281DRAFT_02278 0.59 -1.0 424,460 + H281DRAFT_02278 0.88 -0.0 424,461 - H281DRAFT_02278 0.88 +0.5 424,532 + -1.0 424,601 + +1.2 424,602 - -0.1 424,630 + +0.2 424,636 - +1.0 424,639 - -0.5 424,643 - -1.2 424,690 + +0.2 424,697 - -0.2 424,830 + +1.0 424,831 - -0.0 424,842 + -1.0 424,890 + +0.7 425,101 - H281DRAFT_02279 0.20 +0.1 425,101 - H281DRAFT_02279 0.20 +1.1 425,281 - H281DRAFT_02279 0.32 -0.1
Or see this region's nucleotide sequence