Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02106 and H281DRAFT_02107 are separated by 113 nucleotides H281DRAFT_02107 and H281DRAFT_02108 are separated by 10 nucleotides H281DRAFT_02108 and H281DRAFT_02109 are separated by 288 nucleotides
H281DRAFT_02106: H281DRAFT_02106 - Threonine/homoserine efflux transporter RhtA, at 231,504 to 232,403
_02106
H281DRAFT_02107: H281DRAFT_02107 - Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein, at 232,517 to 232,987
_02107
H281DRAFT_02108: H281DRAFT_02108 - haloacetate dehalogenase, at 232,998 to 233,888
_02108
H281DRAFT_02109: H281DRAFT_02109 - nitronate monooxygenase, at 234,177 to 235,136
_02109
Position (kb) 232
233
234 Strain fitness (log2 ratio) -1
0
1 at 232.442 kb on + strand at 232.443 kb on - strand at 232.443 kb on - strand at 232.443 kb on - strand at 232.463 kb on + strand at 232.463 kb on + strand at 232.464 kb on - strand at 232.478 kb on - strand at 232.500 kb on - strand at 232.999 kb on + strand at 233.064 kb on + strand at 233.068 kb on + strand at 233.068 kb on + strand at 233.069 kb on - strand at 233.254 kb on + strand, within H281DRAFT_02108 at 233.306 kb on - strand, within H281DRAFT_02108 at 233.374 kb on + strand, within H281DRAFT_02108 at 233.374 kb on + strand, within H281DRAFT_02108 at 233.374 kb on + strand, within H281DRAFT_02108 at 233.479 kb on + strand, within H281DRAFT_02108 at 233.480 kb on - strand, within H281DRAFT_02108 at 233.480 kb on - strand, within H281DRAFT_02108 at 233.480 kb on - strand, within H281DRAFT_02108 at 233.480 kb on - strand, within H281DRAFT_02108 at 233.480 kb on - strand, within H281DRAFT_02108 at 233.657 kb on - strand, within H281DRAFT_02108 at 233.702 kb on - strand, within H281DRAFT_02108 at 233.800 kb on - strand at 233.800 kb on - strand at 233.837 kb on + strand at 233.837 kb on + strand at 233.838 kb on - strand at 233.838 kb on - strand at 233.838 kb on - strand at 233.972 kb on + strand at 233.972 kb on + strand at 234.038 kb on - strand at 234.371 kb on + strand, within H281DRAFT_02109 at 234.371 kb on + strand, within H281DRAFT_02109 at 234.371 kb on + strand, within H281DRAFT_02109 at 234.372 kb on - strand, within H281DRAFT_02109 at 234.544 kb on - strand, within H281DRAFT_02109 at 234.659 kb on + strand, within H281DRAFT_02109 at 234.659 kb on + strand, within H281DRAFT_02109 at 234.660 kb on - strand, within H281DRAFT_02109 at 234.783 kb on + strand, within H281DRAFT_02109 at 234.783 kb on + strand, within H281DRAFT_02109 at 234.783 kb on + strand, within H281DRAFT_02109 at 234.783 kb on + strand, within H281DRAFT_02109 at 234.783 kb on + strand, within H281DRAFT_02109 at 234.783 kb on + strand, within H281DRAFT_02109 at 234.784 kb on - strand, within H281DRAFT_02109 at 234.784 kb on - strand, within H281DRAFT_02109 at 234.784 kb on - strand, within H281DRAFT_02109 at 234.784 kb on - strand, within H281DRAFT_02109 at 234.835 kb on - strand, within H281DRAFT_02109 at 234.835 kb on - strand, within H281DRAFT_02109 at 234.835 kb on - strand, within H281DRAFT_02109 at 234.876 kb on + strand, within H281DRAFT_02109 at 234.877 kb on - strand, within H281DRAFT_02109 at 234.877 kb on - strand, within H281DRAFT_02109
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 232,442 + -0.7 232,443 - +0.5 232,443 - -0.2 232,443 - +1.0 232,463 + +0.1 232,463 + +1.6 232,464 - +0.3 232,478 - +0.4 232,500 - +1.1 232,999 + -0.5 233,064 + +0.6 233,068 + +0.3 233,068 + +0.1 233,069 - +1.1 233,254 + H281DRAFT_02108 0.29 -0.1 233,306 - H281DRAFT_02108 0.35 +0.8 233,374 + H281DRAFT_02108 0.42 +0.4 233,374 + H281DRAFT_02108 0.42 +1.3 233,374 + H281DRAFT_02108 0.42 +0.5 233,479 + H281DRAFT_02108 0.54 -0.1 233,480 - H281DRAFT_02108 0.54 +0.7 233,480 - H281DRAFT_02108 0.54 +0.7 233,480 - H281DRAFT_02108 0.54 -0.0 233,480 - H281DRAFT_02108 0.54 -0.3 233,480 - H281DRAFT_02108 0.54 +0.3 233,657 - H281DRAFT_02108 0.74 -0.4 233,702 - H281DRAFT_02108 0.79 +0.8 233,800 - -0.5 233,800 - +1.5 233,837 + +1.1 233,837 + +0.1 233,838 - -0.4 233,838 - -0.0 233,838 - -1.3 233,972 + -0.0 233,972 + -0.0 234,038 - +0.3 234,371 + H281DRAFT_02109 0.20 -0.7 234,371 + H281DRAFT_02109 0.20 -0.2 234,371 + H281DRAFT_02109 0.20 +1.3 234,372 - H281DRAFT_02109 0.20 +0.8 234,544 - H281DRAFT_02109 0.38 +0.7 234,659 + H281DRAFT_02109 0.50 -0.4 234,659 + H281DRAFT_02109 0.50 +0.3 234,660 - H281DRAFT_02109 0.50 +1.5 234,783 + H281DRAFT_02109 0.63 +0.7 234,783 + H281DRAFT_02109 0.63 +0.1 234,783 + H281DRAFT_02109 0.63 +0.2 234,783 + H281DRAFT_02109 0.63 +0.4 234,783 + H281DRAFT_02109 0.63 -1.1 234,783 + H281DRAFT_02109 0.63 +0.8 234,784 - H281DRAFT_02109 0.63 +0.3 234,784 - H281DRAFT_02109 0.63 +0.5 234,784 - H281DRAFT_02109 0.63 -1.0 234,784 - H281DRAFT_02109 0.63 +0.3 234,835 - H281DRAFT_02109 0.69 -0.0 234,835 - H281DRAFT_02109 0.69 +1.0 234,835 - H281DRAFT_02109 0.69 -0.4 234,876 + H281DRAFT_02109 0.73 +0.5 234,877 - H281DRAFT_02109 0.73 +0.5 234,877 - H281DRAFT_02109 0.73 -0.3
Or see this region's nucleotide sequence