Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01900 and H281DRAFT_01901 are separated by 247 nucleotides H281DRAFT_01901 and H281DRAFT_01902 are separated by 94 nucleotides
H281DRAFT_01900: H281DRAFT_01900 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 11,983 to 13,323
_01900
H281DRAFT_01901: H281DRAFT_01901 - Sugar phosphate permease, at 13,571 to 15,094
_01901
H281DRAFT_01902: H281DRAFT_01902 - transcriptional regulator, LysR family, at 15,189 to 16,076
_01902
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.597 kb on - strand, within H281DRAFT_01900 at 12.604 kb on + strand, within H281DRAFT_01900 at 12.604 kb on + strand, within H281DRAFT_01900 at 12.605 kb on - strand, within H281DRAFT_01900 at 12.605 kb on - strand, within H281DRAFT_01900 at 12.605 kb on - strand, within H281DRAFT_01900 at 12.615 kb on + strand, within H281DRAFT_01900 at 12.615 kb on + strand, within H281DRAFT_01900 at 12.616 kb on - strand, within H281DRAFT_01900 at 12.616 kb on - strand, within H281DRAFT_01900 at 12.641 kb on + strand, within H281DRAFT_01900 at 12.641 kb on + strand, within H281DRAFT_01900 at 12.642 kb on - strand, within H281DRAFT_01900 at 12.982 kb on + strand, within H281DRAFT_01900 at 13.167 kb on + strand, within H281DRAFT_01900 at 13.167 kb on + strand, within H281DRAFT_01900 at 13.167 kb on + strand, within H281DRAFT_01900 at 13.168 kb on - strand, within H281DRAFT_01900 at 13.168 kb on - strand, within H281DRAFT_01900 at 13.168 kb on - strand, within H281DRAFT_01900 at 13.173 kb on + strand, within H281DRAFT_01900 at 13.248 kb on + strand at 13.254 kb on + strand at 13.265 kb on + strand at 13.265 kb on + strand at 13.266 kb on - strand at 13.266 kb on - strand at 13.317 kb on + strand at 13.318 kb on - strand at 13.342 kb on + strand at 13.342 kb on + strand at 13.343 kb on - strand at 13.343 kb on - strand at 13.362 kb on + strand at 13.505 kb on - strand at 13.505 kb on - strand at 13.698 kb on - strand at 13.750 kb on + strand, within H281DRAFT_01901 at 13.750 kb on + strand, within H281DRAFT_01901 at 13.750 kb on + strand, within H281DRAFT_01901 at 13.751 kb on - strand, within H281DRAFT_01901 at 13.751 kb on - strand, within H281DRAFT_01901 at 13.977 kb on + strand, within H281DRAFT_01901 at 13.978 kb on - strand, within H281DRAFT_01901 at 13.978 kb on - strand, within H281DRAFT_01901 at 14.169 kb on - strand, within H281DRAFT_01901 at 14.225 kb on - strand, within H281DRAFT_01901 at 14.437 kb on - strand, within H281DRAFT_01901 at 14.466 kb on + strand, within H281DRAFT_01901 at 14.466 kb on + strand, within H281DRAFT_01901 at 14.466 kb on + strand, within H281DRAFT_01901 at 14.466 kb on + strand, within H281DRAFT_01901 at 14.467 kb on - strand, within H281DRAFT_01901 at 14.535 kb on + strand, within H281DRAFT_01901 at 14.536 kb on - strand, within H281DRAFT_01901 at 14.536 kb on - strand, within H281DRAFT_01901 at 15.026 kb on + strand at 15.080 kb on + strand at 15.121 kb on - strand at 15.158 kb on + strand at 15.179 kb on - strand at 15.220 kb on + strand at 15.220 kb on + strand at 15.221 kb on - strand at 15.495 kb on + strand, within H281DRAFT_01902 at 15.496 kb on - strand, within H281DRAFT_01902 at 15.498 kb on + strand, within H281DRAFT_01902 at 15.498 kb on + strand, within H281DRAFT_01902 at 15.765 kb on + strand, within H281DRAFT_01902 at 15.766 kb on - strand, within H281DRAFT_01902 at 15.843 kb on + strand, within H281DRAFT_01902 at 15.843 kb on + strand, within H281DRAFT_01902 at 15.843 kb on + strand at 15.843 kb on + strand, within H281DRAFT_01902 at 15.844 kb on - strand, within H281DRAFT_01902 at 15.844 kb on - strand, within H281DRAFT_01902 at 15.844 kb on - strand, within H281DRAFT_01902
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 12,597 - H281DRAFT_01900 0.46 +0.0 12,604 + H281DRAFT_01900 0.46 -0.4 12,604 + H281DRAFT_01900 0.46 -0.0 12,605 - H281DRAFT_01900 0.46 -0.6 12,605 - H281DRAFT_01900 0.46 +0.6 12,605 - H281DRAFT_01900 0.46 +0.4 12,615 + H281DRAFT_01900 0.47 +0.7 12,615 + H281DRAFT_01900 0.47 +1.3 12,616 - H281DRAFT_01900 0.47 +1.0 12,616 - H281DRAFT_01900 0.47 +1.4 12,641 + H281DRAFT_01900 0.49 +0.2 12,641 + H281DRAFT_01900 0.49 +0.1 12,642 - H281DRAFT_01900 0.49 -0.0 12,982 + H281DRAFT_01900 0.74 +0.7 13,167 + H281DRAFT_01900 0.88 +0.9 13,167 + H281DRAFT_01900 0.88 -0.2 13,167 + H281DRAFT_01900 0.88 +0.5 13,168 - H281DRAFT_01900 0.88 +0.8 13,168 - H281DRAFT_01900 0.88 +1.4 13,168 - H281DRAFT_01900 0.88 -0.2 13,173 + H281DRAFT_01900 0.89 -0.9 13,248 + +0.4 13,254 + +1.6 13,265 + -1.9 13,265 + +0.5 13,266 - -0.4 13,266 - -0.6 13,317 + -0.6 13,318 - -0.2 13,342 + +0.6 13,342 + +0.2 13,343 - +0.4 13,343 - +2.6 13,362 + +1.4 13,505 - -0.3 13,505 - -0.7 13,698 - +0.3 13,750 + H281DRAFT_01901 0.12 +0.4 13,750 + H281DRAFT_01901 0.12 -0.2 13,750 + H281DRAFT_01901 0.12 -1.0 13,751 - H281DRAFT_01901 0.12 +0.1 13,751 - H281DRAFT_01901 0.12 +0.3 13,977 + H281DRAFT_01901 0.27 +0.0 13,978 - H281DRAFT_01901 0.27 -0.2 13,978 - H281DRAFT_01901 0.27 +0.6 14,169 - H281DRAFT_01901 0.39 +0.2 14,225 - H281DRAFT_01901 0.43 +0.2 14,437 - H281DRAFT_01901 0.57 +0.4 14,466 + H281DRAFT_01901 0.59 +0.2 14,466 + H281DRAFT_01901 0.59 +0.3 14,466 + H281DRAFT_01901 0.59 +1.7 14,466 + H281DRAFT_01901 0.59 +0.6 14,467 - H281DRAFT_01901 0.59 -0.3 14,535 + H281DRAFT_01901 0.63 +0.1 14,536 - H281DRAFT_01901 0.63 -0.6 14,536 - H281DRAFT_01901 0.63 +1.6 15,026 + +0.2 15,080 + +0.1 15,121 - +0.2 15,158 + -0.1 15,179 - +0.2 15,220 + +0.5 15,220 + +0.9 15,221 - -0.7 15,495 + H281DRAFT_01902 0.34 +0.7 15,496 - H281DRAFT_01902 0.35 +0.1 15,498 + H281DRAFT_01902 0.35 +0.5 15,498 + H281DRAFT_01902 0.35 +0.1 15,765 + H281DRAFT_01902 0.65 -0.3 15,766 - H281DRAFT_01902 0.65 +0.6 15,843 + H281DRAFT_01902 0.74 -0.4 15,843 + H281DRAFT_01902 0.74 -0.2 15,843 + -0.6 15,843 + H281DRAFT_01902 0.74 -0.1 15,844 - H281DRAFT_01902 0.74 +0.2 15,844 - H281DRAFT_01902 0.74 -0.5 15,844 - H281DRAFT_01902 0.74 +0.5
Or see this region's nucleotide sequence