Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01387 and H281DRAFT_01388 are separated by 72 nucleotides H281DRAFT_01388 and H281DRAFT_01389 are separated by 398 nucleotides
H281DRAFT_01387: H281DRAFT_01387 - Cytochrome c biogenesis factor, at 234,448 to 239,232
_01387
H281DRAFT_01388: H281DRAFT_01388 - Uncharacterized conserved protein, DUF2252 family, at 239,305 to 240,570
_01388
H281DRAFT_01389: H281DRAFT_01389 - PAS domain S-box-containing protein, at 240,969 to 243,668
_01389
Position (kb) 239
240
241 Strain fitness (log2 ratio) -2
-1
0
1 at 238.406 kb on + strand, within H281DRAFT_01387 at 238.407 kb on - strand at 238.807 kb on + strand at 238.807 kb on + strand at 238.857 kb on + strand at 238.916 kb on - strand at 239.113 kb on + strand at 239.114 kb on - strand at 239.144 kb on - strand at 239.591 kb on - strand, within H281DRAFT_01388 at 240.352 kb on + strand at 240.353 kb on - strand, within H281DRAFT_01388 at 240.431 kb on + strand, within H281DRAFT_01388 at 240.431 kb on + strand, within H281DRAFT_01388 at 240.432 kb on - strand, within H281DRAFT_01388 at 240.432 kb on - strand, within H281DRAFT_01388 at 240.574 kb on + strand at 240.574 kb on + strand at 240.574 kb on + strand at 240.575 kb on - strand at 240.575 kb on - strand at 240.587 kb on + strand at 240.704 kb on - strand at 240.742 kb on - strand at 240.784 kb on + strand at 240.784 kb on + strand at 240.856 kb on + strand at 240.873 kb on + strand at 240.892 kb on - strand at 240.911 kb on + strand at 241.168 kb on - strand at 241.209 kb on + strand at 241.210 kb on - strand at 241.210 kb on - strand at 241.277 kb on + strand, within H281DRAFT_01389 at 241.278 kb on - strand, within H281DRAFT_01389 at 241.368 kb on + strand, within H281DRAFT_01389 at 241.411 kb on + strand, within H281DRAFT_01389 at 241.412 kb on - strand, within H281DRAFT_01389
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 238,406 + H281DRAFT_01387 0.83 +0.6 238,407 - +1.5 238,807 + +0.4 238,807 + +0.0 238,857 + +0.0 238,916 - +0.8 239,113 + -0.6 239,114 - +0.8 239,144 - +0.1 239,591 - H281DRAFT_01388 0.23 +0.9 240,352 + +0.9 240,353 - H281DRAFT_01388 0.83 +0.2 240,431 + H281DRAFT_01388 0.89 +0.7 240,431 + H281DRAFT_01388 0.89 +1.1 240,432 - H281DRAFT_01388 0.89 -1.2 240,432 - H281DRAFT_01388 0.89 +0.5 240,574 + +1.1 240,574 + +0.8 240,574 + +0.6 240,575 - +0.5 240,575 - +0.0 240,587 + +0.3 240,704 - +0.2 240,742 - +0.2 240,784 + +0.1 240,784 + +0.0 240,856 + -0.8 240,873 + +0.9 240,892 - -0.4 240,911 + +1.3 241,168 - +1.1 241,209 + -0.1 241,210 - -1.0 241,210 - -0.4 241,277 + H281DRAFT_01389 0.11 -1.0 241,278 - H281DRAFT_01389 0.11 -0.3 241,368 + H281DRAFT_01389 0.15 -1.9 241,411 + H281DRAFT_01389 0.16 -0.8 241,412 - H281DRAFT_01389 0.16 +0.0
Or see this region's nucleotide sequence