Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00668 and H281DRAFT_00669 are separated by 16 nucleotides H281DRAFT_00669 and H281DRAFT_00670 are separated by 460 nucleotides H281DRAFT_00670 and H281DRAFT_00671 are separated by 100 nucleotides H281DRAFT_00671 and H281DRAFT_00672 are separated by 47 nucleotides
H281DRAFT_00668: H281DRAFT_00668 - tagaturonate reductase, at 750,541 to 751,674
_00668
H281DRAFT_00669: H281DRAFT_00669 - 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase, at 751,691 to 752,701
_00669
H281DRAFT_00670: H281DRAFT_00670 - hypothetical protein, at 753,162 to 753,314
_00670
H281DRAFT_00671: H281DRAFT_00671 - hypothetical protein, at 753,415 to 753,612
_00671
H281DRAFT_00672: H281DRAFT_00672 - hypothetical protein, at 753,660 to 753,824
_00672
Position (kb) 751
752
753 Strain fitness (log2 ratio) -1
0
1
2 at 750.834 kb on + strand, within H281DRAFT_00668 at 750.835 kb on - strand, within H281DRAFT_00668 at 750.921 kb on - strand, within H281DRAFT_00668 at 751.097 kb on + strand, within H281DRAFT_00668 at 751.159 kb on + strand, within H281DRAFT_00668 at 751.347 kb on + strand, within H281DRAFT_00668 at 751.913 kb on + strand, within H281DRAFT_00669 at 752.022 kb on + strand, within H281DRAFT_00669 at 752.023 kb on - strand, within H281DRAFT_00669 at 752.069 kb on - strand, within H281DRAFT_00669 at 752.096 kb on + strand, within H281DRAFT_00669 at 752.428 kb on + strand, within H281DRAFT_00669 at 752.428 kb on + strand, within H281DRAFT_00669 at 752.429 kb on - strand, within H281DRAFT_00669 at 752.460 kb on + strand, within H281DRAFT_00669 at 752.545 kb on - strand, within H281DRAFT_00669 at 752.622 kb on - strand at 752.860 kb on + strand at 752.917 kb on - strand at 752.917 kb on - strand at 752.946 kb on + strand at 752.947 kb on + strand at 752.947 kb on + strand at 752.947 kb on + strand at 753.039 kb on - strand at 753.042 kb on + strand at 753.088 kb on + strand at 753.205 kb on + strand at 753.205 kb on + strand, within H281DRAFT_00670 at 753.205 kb on + strand, within H281DRAFT_00670 at 753.205 kb on + strand, within H281DRAFT_00670 at 753.206 kb on - strand, within H281DRAFT_00670 at 753.206 kb on - strand, within H281DRAFT_00670 at 753.206 kb on - strand, within H281DRAFT_00670 at 753.212 kb on - strand, within H281DRAFT_00670 at 753.212 kb on - strand, within H281DRAFT_00670 at 753.214 kb on - strand, within H281DRAFT_00670 at 753.214 kb on - strand, within H281DRAFT_00670 at 753.278 kb on + strand, within H281DRAFT_00670 at 753.329 kb on - strand at 753.367 kb on - strand at 753.389 kb on - strand at 753.484 kb on - strand, within H281DRAFT_00671 at 753.484 kb on - strand, within H281DRAFT_00671 at 753.484 kb on - strand, within H281DRAFT_00671 at 753.619 kb on - strand at 753.678 kb on - strand, within H281DRAFT_00672 at 753.694 kb on + strand, within H281DRAFT_00672
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 750,834 + H281DRAFT_00668 0.26 +2.3 750,835 - H281DRAFT_00668 0.26 +0.0 750,921 - H281DRAFT_00668 0.34 -0.0 751,097 + H281DRAFT_00668 0.49 +0.8 751,159 + H281DRAFT_00668 0.54 +0.6 751,347 + H281DRAFT_00668 0.71 +0.6 751,913 + H281DRAFT_00669 0.22 +0.1 752,022 + H281DRAFT_00669 0.33 +0.5 752,023 - H281DRAFT_00669 0.33 -0.9 752,069 - H281DRAFT_00669 0.37 +0.7 752,096 + H281DRAFT_00669 0.40 +0.2 752,428 + H281DRAFT_00669 0.73 -0.3 752,428 + H281DRAFT_00669 0.73 +0.4 752,429 - H281DRAFT_00669 0.73 -0.3 752,460 + H281DRAFT_00669 0.76 +0.4 752,545 - H281DRAFT_00669 0.84 -0.6 752,622 - +0.2 752,860 + -0.3 752,917 - -0.5 752,917 - +0.0 752,946 + -0.4 752,947 + +0.4 752,947 + -1.0 752,947 + -0.4 753,039 - -0.1 753,042 + +0.4 753,088 + -0.1 753,205 + +2.0 753,205 + H281DRAFT_00670 0.28 +0.8 753,205 + H281DRAFT_00670 0.28 -1.2 753,205 + H281DRAFT_00670 0.28 +0.7 753,206 - H281DRAFT_00670 0.29 -0.4 753,206 - H281DRAFT_00670 0.29 -0.5 753,206 - H281DRAFT_00670 0.29 +2.4 753,212 - H281DRAFT_00670 0.33 +1.0 753,212 - H281DRAFT_00670 0.33 -1.1 753,214 - H281DRAFT_00670 0.34 +0.7 753,214 - H281DRAFT_00670 0.34 -0.4 753,278 + H281DRAFT_00670 0.76 +0.5 753,329 - -0.4 753,367 - +0.3 753,389 - +0.3 753,484 - H281DRAFT_00671 0.35 -0.3 753,484 - H281DRAFT_00671 0.35 +0.3 753,484 - H281DRAFT_00671 0.35 +0.3 753,619 - +0.3 753,678 - H281DRAFT_00672 0.11 -0.3 753,694 + H281DRAFT_00672 0.21 -0.2
Or see this region's nucleotide sequence