Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00153 and H281DRAFT_00154 are separated by 28 nucleotides H281DRAFT_00154 and H281DRAFT_00155 are separated by 151 nucleotides
H281DRAFT_00153: H281DRAFT_00153 - autotransporter secretion outer membrane protein TamA, at 157,219 to 158,979
_00153
H281DRAFT_00154: H281DRAFT_00154 - autotransporter secretion inner membrane protein TamB, at 159,008 to 163,381
_00154
H281DRAFT_00155: H281DRAFT_00155 - methionyl-tRNA synthetase, at 163,533 to 165,671
_00155
Position (kb) 159
160
161
162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 158.039 kb on + strand, within H281DRAFT_00153 at 158.047 kb on + strand, within H281DRAFT_00153 at 158.053 kb on + strand, within H281DRAFT_00153 at 158.053 kb on + strand, within H281DRAFT_00153 at 158.053 kb on + strand, within H281DRAFT_00153 at 158.054 kb on - strand, within H281DRAFT_00153 at 158.123 kb on - strand, within H281DRAFT_00153 at 158.123 kb on - strand, within H281DRAFT_00153 at 158.123 kb on - strand, within H281DRAFT_00153 at 158.130 kb on + strand, within H281DRAFT_00153 at 158.130 kb on + strand, within H281DRAFT_00153 at 158.131 kb on - strand, within H281DRAFT_00153 at 158.238 kb on + strand, within H281DRAFT_00153 at 158.239 kb on - strand, within H281DRAFT_00153 at 158.255 kb on - strand, within H281DRAFT_00153 at 158.283 kb on + strand, within H281DRAFT_00153 at 158.288 kb on - strand, within H281DRAFT_00153 at 158.338 kb on + strand, within H281DRAFT_00153 at 158.344 kb on + strand, within H281DRAFT_00153 at 158.344 kb on + strand, within H281DRAFT_00153 at 158.344 kb on + strand, within H281DRAFT_00153 at 158.344 kb on + strand, within H281DRAFT_00153 at 158.344 kb on + strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.345 kb on - strand, within H281DRAFT_00153 at 158.359 kb on + strand, within H281DRAFT_00153 at 158.360 kb on - strand, within H281DRAFT_00153 at 158.504 kb on + strand, within H281DRAFT_00153 at 158.505 kb on - strand, within H281DRAFT_00153 at 158.615 kb on + strand, within H281DRAFT_00153 at 158.616 kb on - strand, within H281DRAFT_00153 at 158.698 kb on + strand, within H281DRAFT_00153 at 158.712 kb on + strand, within H281DRAFT_00153 at 158.713 kb on - strand, within H281DRAFT_00153 at 158.746 kb on + strand, within H281DRAFT_00153 at 158.746 kb on + strand, within H281DRAFT_00153 at 158.746 kb on + strand, within H281DRAFT_00153 at 158.746 kb on + strand, within H281DRAFT_00153 at 158.746 kb on + strand, within H281DRAFT_00153 at 158.747 kb on - strand, within H281DRAFT_00153 at 158.747 kb on - strand, within H281DRAFT_00153 at 158.747 kb on - strand, within H281DRAFT_00153 at 158.747 kb on - strand, within H281DRAFT_00153 at 158.771 kb on - strand, within H281DRAFT_00153 at 158.771 kb on - strand, within H281DRAFT_00153 at 158.771 kb on - strand, within H281DRAFT_00153 at 158.771 kb on - strand, within H281DRAFT_00153 at 158.771 kb on - strand, within H281DRAFT_00153 at 158.924 kb on - strand at 158.994 kb on + strand at 159.239 kb on + strand at 159.239 kb on + strand at 159.239 kb on + strand at 159.239 kb on + strand at 159.382 kb on + strand at 159.383 kb on - strand at 159.383 kb on - strand at 159.434 kb on + strand at 159.448 kb on + strand, within H281DRAFT_00154 at 159.735 kb on + strand, within H281DRAFT_00154 at 159.735 kb on + strand at 159.735 kb on + strand, within H281DRAFT_00154 at 159.736 kb on - strand, within H281DRAFT_00154 at 159.741 kb on - strand, within H281DRAFT_00154 at 159.769 kb on - strand, within H281DRAFT_00154 at 160.183 kb on + strand, within H281DRAFT_00154 at 160.561 kb on + strand, within H281DRAFT_00154 at 160.561 kb on + strand, within H281DRAFT_00154 at 160.562 kb on - strand, within H281DRAFT_00154 at 160.562 kb on - strand, within H281DRAFT_00154 at 160.625 kb on + strand, within H281DRAFT_00154 at 160.626 kb on - strand, within H281DRAFT_00154 at 161.255 kb on + strand, within H281DRAFT_00154 at 161.413 kb on - strand, within H281DRAFT_00154 at 161.803 kb on - strand, within H281DRAFT_00154 at 162.140 kb on + strand, within H281DRAFT_00154 at 162.141 kb on - strand, within H281DRAFT_00154 at 162.199 kb on + strand, within H281DRAFT_00154 at 162.279 kb on + strand, within H281DRAFT_00154 at 162.279 kb on + strand, within H281DRAFT_00154 at 162.279 kb on + strand, within H281DRAFT_00154 at 162.445 kb on + strand, within H281DRAFT_00154 at 162.445 kb on + strand, within H281DRAFT_00154 at 162.446 kb on - strand, within H281DRAFT_00154 at 162.446 kb on - strand, within H281DRAFT_00154 at 162.647 kb on - strand, within H281DRAFT_00154 at 162.821 kb on + strand, within H281DRAFT_00154 at 162.821 kb on + strand, within H281DRAFT_00154 at 162.821 kb on + strand, within H281DRAFT_00154 at 162.839 kb on - strand, within H281DRAFT_00154 at 163.239 kb on - strand at 163.239 kb on - strand at 163.298 kb on + strand at 163.298 kb on + strand at 163.347 kb on + strand at 163.348 kb on - strand at 163.349 kb on + strand at 163.349 kb on + strand at 163.349 kb on + strand at 163.350 kb on - strand at 163.464 kb on + strand at 163.492 kb on + strand at 163.515 kb on + strand at 163.516 kb on - strand at 163.516 kb on - strand at 163.519 kb on + strand at 163.520 kb on - strand at 163.520 kb on - strand at 163.520 kb on - strand at 163.534 kb on + strand at 163.534 kb on + strand at 163.771 kb on - strand, within H281DRAFT_00155
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 158,039 + H281DRAFT_00153 0.47 -2.7 158,047 + H281DRAFT_00153 0.47 -0.6 158,053 + H281DRAFT_00153 0.47 -0.4 158,053 + H281DRAFT_00153 0.47 -1.1 158,053 + H281DRAFT_00153 0.47 -0.2 158,054 - H281DRAFT_00153 0.47 -0.1 158,123 - H281DRAFT_00153 0.51 -0.0 158,123 - H281DRAFT_00153 0.51 -0.1 158,123 - H281DRAFT_00153 0.51 -0.1 158,130 + H281DRAFT_00153 0.52 +0.1 158,130 + H281DRAFT_00153 0.52 +1.9 158,131 - H281DRAFT_00153 0.52 -0.1 158,238 + H281DRAFT_00153 0.58 -0.8 158,239 - H281DRAFT_00153 0.58 +0.5 158,255 - H281DRAFT_00153 0.59 -0.4 158,283 + H281DRAFT_00153 0.60 +0.0 158,288 - H281DRAFT_00153 0.61 -0.4 158,338 + H281DRAFT_00153 0.64 -0.5 158,344 + H281DRAFT_00153 0.64 -0.9 158,344 + H281DRAFT_00153 0.64 +0.4 158,344 + H281DRAFT_00153 0.64 -0.4 158,344 + H281DRAFT_00153 0.64 -0.1 158,344 + H281DRAFT_00153 0.64 +0.1 158,345 - H281DRAFT_00153 0.64 +0.6 158,345 - H281DRAFT_00153 0.64 -0.3 158,345 - H281DRAFT_00153 0.64 -0.4 158,345 - H281DRAFT_00153 0.64 -0.3 158,345 - H281DRAFT_00153 0.64 -0.5 158,345 - H281DRAFT_00153 0.64 -0.4 158,359 + H281DRAFT_00153 0.65 +1.3 158,360 - H281DRAFT_00153 0.65 -0.0 158,504 + H281DRAFT_00153 0.73 -1.3 158,505 - H281DRAFT_00153 0.73 +0.4 158,615 + H281DRAFT_00153 0.79 +0.4 158,616 - H281DRAFT_00153 0.79 -0.3 158,698 + H281DRAFT_00153 0.84 +0.6 158,712 + H281DRAFT_00153 0.85 -0.8 158,713 - H281DRAFT_00153 0.85 +0.1 158,746 + H281DRAFT_00153 0.87 -0.4 158,746 + H281DRAFT_00153 0.87 -0.6 158,746 + H281DRAFT_00153 0.87 -0.3 158,746 + H281DRAFT_00153 0.87 -0.6 158,746 + H281DRAFT_00153 0.87 -0.2 158,747 - H281DRAFT_00153 0.87 -0.5 158,747 - H281DRAFT_00153 0.87 +0.1 158,747 - H281DRAFT_00153 0.87 -0.4 158,747 - H281DRAFT_00153 0.87 -1.8 158,771 - H281DRAFT_00153 0.88 -0.9 158,771 - H281DRAFT_00153 0.88 +0.1 158,771 - H281DRAFT_00153 0.88 -0.4 158,771 - H281DRAFT_00153 0.88 +2.0 158,771 - H281DRAFT_00153 0.88 +0.4 158,924 - -0.3 158,994 + +0.0 159,239 + +1.0 159,239 + -0.5 159,239 + -0.6 159,239 + -0.6 159,382 + -0.0 159,383 - -0.4 159,383 - -0.4 159,434 + -0.4 159,448 + H281DRAFT_00154 0.10 -0.6 159,735 + H281DRAFT_00154 0.17 -1.1 159,735 + -1.4 159,735 + H281DRAFT_00154 0.17 -0.5 159,736 - H281DRAFT_00154 0.17 -0.9 159,741 - H281DRAFT_00154 0.17 -0.1 159,769 - H281DRAFT_00154 0.17 -0.4 160,183 + H281DRAFT_00154 0.27 -0.8 160,561 + H281DRAFT_00154 0.36 -0.3 160,561 + H281DRAFT_00154 0.36 -1.3 160,562 - H281DRAFT_00154 0.36 -1.2 160,562 - H281DRAFT_00154 0.36 -0.2 160,625 + H281DRAFT_00154 0.37 -0.3 160,626 - H281DRAFT_00154 0.37 -0.5 161,255 + H281DRAFT_00154 0.51 -1.5 161,413 - H281DRAFT_00154 0.55 +0.0 161,803 - H281DRAFT_00154 0.64 -0.2 162,140 + H281DRAFT_00154 0.72 -0.5 162,141 - H281DRAFT_00154 0.72 +0.3 162,199 + H281DRAFT_00154 0.73 -0.6 162,279 + H281DRAFT_00154 0.75 +0.0 162,279 + H281DRAFT_00154 0.75 +1.1 162,279 + H281DRAFT_00154 0.75 +0.8 162,445 + H281DRAFT_00154 0.79 -0.5 162,445 + H281DRAFT_00154 0.79 +0.1 162,446 - H281DRAFT_00154 0.79 -0.6 162,446 - H281DRAFT_00154 0.79 +3.4 162,647 - H281DRAFT_00154 0.83 -0.7 162,821 + H281DRAFT_00154 0.87 +0.2 162,821 + H281DRAFT_00154 0.87 -0.4 162,821 + H281DRAFT_00154 0.87 -0.0 162,839 - H281DRAFT_00154 0.88 -1.9 163,239 - -1.8 163,239 - -1.2 163,298 + -1.8 163,298 + +0.3 163,347 + -0.6 163,348 - -0.7 163,349 + +0.2 163,349 + -1.5 163,349 + +0.1 163,350 - -0.5 163,464 + -0.4 163,492 + -1.0 163,515 + -0.2 163,516 - +0.0 163,516 - +0.1 163,519 + -0.5 163,520 - +0.8 163,520 - -1.2 163,520 - -0.3 163,534 + +0.9 163,534 + -0.4 163,771 - H281DRAFT_00155 0.11 -0.2
Or see this region's nucleotide sequence