Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15850 and BWI76_RS15855 overlap by 4 nucleotides BWI76_RS15855 and BWI76_RS15860 overlap by 4 nucleotides BWI76_RS15860 and BWI76_RS15865 overlap by 4 nucleotides BWI76_RS15865 and BWI76_RS15870 overlap by 4 nucleotides BWI76_RS15870 and BWI76_RS15875 are separated by 95 nucleotides
BWI76_RS15850: BWI76_RS15850 - DUF1317 domain-containing protein, at 3,293,076 to 3,293,234
_RS15850
BWI76_RS15855: BWI76_RS15855 - hypothetical protein, at 3,293,231 to 3,293,458
_RS15855
BWI76_RS15860: BWI76_RS15860 - adenine-specific DNA methyltransferase, at 3,293,455 to 3,294,114
_RS15860
BWI76_RS15865: BWI76_RS15865 - hypothetical protein, at 3,294,111 to 3,294,332
_RS15865
BWI76_RS15870: BWI76_RS15870 - hypothetical protein, at 3,294,329 to 3,295,048
_RS15870
BWI76_RS15875: BWI76_RS15875 - hypothetical protein, at 3,295,144 to 3,295,383
_RS15875
Position (kb)
3294
3295 Strain fitness (log2 ratio)
-1
0
1
2 at 3293.200 kb on - strand, within BWI76_RS15850 at 3293.215 kb on + strand, within BWI76_RS15850 at 3293.538 kb on + strand, within BWI76_RS15860 at 3293.610 kb on + strand, within BWI76_RS15860 at 3293.677 kb on - strand, within BWI76_RS15860 at 3293.694 kb on - strand, within BWI76_RS15860 at 3293.736 kb on + strand, within BWI76_RS15860 at 3293.814 kb on - strand, within BWI76_RS15860 at 3293.968 kb on - strand, within BWI76_RS15860 at 3294.160 kb on + strand, within BWI76_RS15865 at 3294.202 kb on - strand, within BWI76_RS15865 at 3294.202 kb on - strand, within BWI76_RS15865 at 3294.223 kb on + strand, within BWI76_RS15865 at 3295.027 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 3,293,200 - BWI76_RS15850 0.78 +1.0 3,293,215 + BWI76_RS15850 0.87 +1.0 3,293,538 + BWI76_RS15860 0.13 +2.0 3,293,610 + BWI76_RS15860 0.23 +1.6 3,293,677 - BWI76_RS15860 0.34 +0.8 3,293,694 - BWI76_RS15860 0.36 +1.3 3,293,736 + BWI76_RS15860 0.43 +1.7 3,293,814 - BWI76_RS15860 0.54 +1.6 3,293,968 - BWI76_RS15860 0.78 +0.9 3,294,160 + BWI76_RS15865 0.22 +1.2 3,294,202 - BWI76_RS15865 0.41 +1.2 3,294,202 - BWI76_RS15865 0.41 +1.1 3,294,223 + BWI76_RS15865 0.50 +1.6 3,295,027 + +2.3
Or see this region's nucleotide sequence