Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15740

Experiment: a-Cyclodextrin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15730 and BWI76_RS15735 overlap by 8 nucleotidesBWI76_RS15735 and BWI76_RS15740 overlap by 4 nucleotidesBWI76_RS15740 and BWI76_RS15745 overlap by 1 nucleotidesBWI76_RS15745 and BWI76_RS15750 overlap by 4 nucleotides BWI76_RS15730: BWI76_RS15730 - hypothetical protein, at 3,280,237 to 3,280,467 _RS15730 BWI76_RS15735: BWI76_RS15735 - hypothetical protein, at 3,280,460 to 3,281,005 _RS15735 BWI76_RS15740: BWI76_RS15740 - HNH endonuclease, at 3,281,002 to 3,281,382 _RS15740 BWI76_RS15745: BWI76_RS15745 - hypothetical protein, at 3,281,382 to 3,282,116 _RS15745 BWI76_RS15750: BWI76_RS15750 - hypothetical protein, at 3,282,113 to 3,282,430 _RS15750 Position (kb) 3281 3282Strain fitness (log2 ratio) -1 0 1 2at 3280.350 kb on - strand, within BWI76_RS15730at 3280.459 kb on - strandat 3280.712 kb on + strand, within BWI76_RS15735at 3280.717 kb on - strand, within BWI76_RS15735at 3280.976 kb on - strandat 3281.124 kb on - strand, within BWI76_RS15740at 3281.236 kb on + strand, within BWI76_RS15740at 3281.238 kb on + strand, within BWI76_RS15740at 3281.520 kb on - strand, within BWI76_RS15745at 3281.692 kb on + strand, within BWI76_RS15745at 3281.700 kb on - strand, within BWI76_RS15745at 3281.917 kb on + strand, within BWI76_RS15745at 3281.925 kb on - strand, within BWI76_RS15745at 3282.080 kb on + strandat 3282.127 kb on + strandat 3282.163 kb on + strand, within BWI76_RS15750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
remove
3,280,350 - BWI76_RS15730 0.49 +2.3
3,280,459 - +2.2
3,280,712 + BWI76_RS15735 0.46 +2.0
3,280,717 - BWI76_RS15735 0.47 +2.4
3,280,976 - +2.4
3,281,124 - BWI76_RS15740 0.32 +2.4
3,281,236 + BWI76_RS15740 0.61 +1.5
3,281,238 + BWI76_RS15740 0.62 +1.9
3,281,520 - BWI76_RS15745 0.19 +2.3
3,281,692 + BWI76_RS15745 0.42 +2.4
3,281,700 - BWI76_RS15745 0.43 +2.0
3,281,917 + BWI76_RS15745 0.73 +2.5
3,281,925 - BWI76_RS15745 0.74 +2.5
3,282,080 + +1.6
3,282,127 + +2.6
3,282,163 + BWI76_RS15750 0.16 +2.1

Or see this region's nucleotide sequence