Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08390 and BWI76_RS08395 overlap by 17 nucleotides BWI76_RS08395 and BWI76_RS08400 overlap by 7 nucleotides BWI76_RS08400 and BWI76_RS08405 overlap by 1 nucleotides BWI76_RS08405 and BWI76_RS08410 are separated by 15 nucleotides
BWI76_RS08390: BWI76_RS08390 - hypothetical protein, at 1,775,399 to 1,775,617
_RS08390
BWI76_RS08395: BWI76_RS08395 - succinate dehydrogenase cytochrome b556 large subunit, at 1,775,601 to 1,776,005
_RS08395
BWI76_RS08400: BWI76_RS08400 - succinate dehydrogenase cytochrome b556 small membrane subunit, at 1,775,999 to 1,776,346
_RS08400
BWI76_RS08405: BWI76_RS08405 - succinate dehydrogenase flavoprotein subunit, at 1,776,346 to 1,778,112
_RS08405
BWI76_RS08410: BWI76_RS08410 - succinate dehydrogenase iron-sulfur subunit, at 1,778,128 to 1,778,844
_RS08410
Position (kb) 1776
1777
1778
1779 Strain fitness (log2 ratio) -1
0
1 at 1775.450 kb on + strand, within BWI76_RS08390 at 1775.461 kb on - strand, within BWI76_RS08390 at 1775.658 kb on - strand at 1775.929 kb on - strand, within BWI76_RS08395 at 1776.180 kb on - strand, within BWI76_RS08400 at 1776.331 kb on + strand at 1776.374 kb on - strand at 1776.384 kb on - strand at 1776.438 kb on + strand at 1776.569 kb on + strand, within BWI76_RS08405 at 1776.836 kb on + strand, within BWI76_RS08405 at 1776.973 kb on - strand, within BWI76_RS08405 at 1777.484 kb on + strand, within BWI76_RS08405 at 1777.793 kb on + strand, within BWI76_RS08405 at 1778.846 kb on - strand at 1778.981 kb on + strand at 1779.007 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 1,775,450 + BWI76_RS08390 0.23 +0.5 1,775,461 - BWI76_RS08390 0.28 +0.5 1,775,658 - -0.1 1,775,929 - BWI76_RS08395 0.81 +0.4 1,776,180 - BWI76_RS08400 0.52 +0.4 1,776,331 + +0.3 1,776,374 - -0.4 1,776,384 - +1.4 1,776,438 + -0.9 1,776,569 + BWI76_RS08405 0.13 -1.1 1,776,836 + BWI76_RS08405 0.28 +0.7 1,776,973 - BWI76_RS08405 0.35 -1.4 1,777,484 + BWI76_RS08405 0.64 -1.1 1,777,793 + BWI76_RS08405 0.82 -0.9 1,778,846 - +0.1 1,778,981 + +0.2 1,779,007 + +0.8
Or see this region's nucleotide sequence