Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0438 and DVU0439 are separated by 34 nucleotides DVU0439 and DVU0440 are separated by 468 nucleotides
DVU0438: DVU0438 - AcrB/AcrD/AcrF family protein (TIGR), at 492,212 to 495,337
DVU0438
DVU0439: DVU0439 - YCII-related domain protein (TIGR), at 495,372 to 495,662
DVU0439
DVU0440: DVU0440 - conserved hypothetical protein (TIGR), at 496,131 to 497,462
DVU0440
Position (kb) 495
496 Strain fitness (log2 ratio) -2
-1
0
1 at 494.434 kb on + strand, within DVU0438 at 494.443 kb on - strand, within DVU0438 at 494.464 kb on - strand, within DVU0438 at 494.483 kb on - strand, within DVU0438 at 494.579 kb on - strand, within DVU0438 at 494.623 kb on + strand, within DVU0438 at 494.639 kb on - strand, within DVU0438 at 494.643 kb on + strand, within DVU0438 at 494.643 kb on + strand, within DVU0438 at 494.643 kb on + strand, within DVU0438 at 494.643 kb on + strand, within DVU0438 at 494.643 kb on + strand, within DVU0438 at 494.651 kb on - strand, within DVU0438 at 494.651 kb on - strand, within DVU0438 at 494.651 kb on - strand, within DVU0438 at 494.698 kb on - strand, within DVU0438 at 494.703 kb on - strand, within DVU0438 at 494.722 kb on - strand, within DVU0438 at 494.750 kb on + strand, within DVU0438 at 494.757 kb on + strand, within DVU0438 at 494.771 kb on + strand, within DVU0438 at 494.776 kb on + strand, within DVU0438 at 494.784 kb on - strand, within DVU0438 at 494.784 kb on - strand, within DVU0438 at 494.794 kb on + strand, within DVU0438 at 494.802 kb on - strand, within DVU0438 at 494.852 kb on - strand, within DVU0438 at 494.866 kb on + strand, within DVU0438 at 494.886 kb on - strand, within DVU0438 at 494.917 kb on - strand, within DVU0438 at 494.936 kb on - strand, within DVU0438 at 494.943 kb on - strand, within DVU0438 at 495.041 kb on - strand at 495.041 kb on - strand at 495.069 kb on - strand at 495.131 kb on + strand at 495.190 kb on - strand at 495.220 kb on + strand at 495.235 kb on + strand at 495.243 kb on - strand at 495.243 kb on - strand at 495.243 kb on - strand at 495.308 kb on + strand at 495.420 kb on + strand, within DVU0439 at 495.421 kb on - strand, within DVU0439 at 495.484 kb on - strand, within DVU0439 at 495.496 kb on + strand, within DVU0439 at 495.515 kb on - strand, within DVU0439 at 495.581 kb on + strand, within DVU0439 at 495.581 kb on + strand, within DVU0439 at 495.866 kb on - strand at 495.918 kb on + strand at 495.921 kb on + strand at 495.949 kb on + strand at 495.957 kb on - strand at 496.018 kb on + strand at 496.023 kb on + strand at 496.026 kb on - strand at 496.031 kb on - strand at 496.031 kb on - strand at 496.180 kb on + strand at 496.183 kb on - strand at 496.194 kb on - strand at 496.199 kb on + strand at 496.226 kb on + strand at 496.234 kb on - strand at 496.255 kb on - strand at 496.265 kb on + strand, within DVU0440 at 496.275 kb on + strand, within DVU0440 at 496.313 kb on + strand, within DVU0440 at 496.345 kb on + strand, within DVU0440 at 496.352 kb on - strand, within DVU0440 at 496.368 kb on - strand, within DVU0440 at 496.405 kb on - strand, within DVU0440 at 496.418 kb on - strand, within DVU0440 at 496.422 kb on + strand, within DVU0440 at 496.468 kb on - strand, within DVU0440 at 496.483 kb on - strand, within DVU0440 at 496.505 kb on - strand, within DVU0440 at 496.505 kb on - strand, within DVU0440 at 496.505 kb on - strand, within DVU0440 at 496.507 kb on + strand, within DVU0440 at 496.512 kb on + strand, within DVU0440 at 496.515 kb on - strand, within DVU0440 at 496.550 kb on - strand, within DVU0440 at 496.609 kb on + strand, within DVU0440
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM) remove 494,434 + DVU0438 0.71 -0.1 494,443 - DVU0438 0.71 -2.1 494,464 - DVU0438 0.72 +0.0 494,483 - DVU0438 0.73 -0.0 494,579 - DVU0438 0.76 +0.1 494,623 + DVU0438 0.77 +0.7 494,639 - DVU0438 0.78 -0.9 494,643 + DVU0438 0.78 -0.3 494,643 + DVU0438 0.78 -0.6 494,643 + DVU0438 0.78 -0.3 494,643 + DVU0438 0.78 -0.0 494,643 + DVU0438 0.78 +1.2 494,651 - DVU0438 0.78 +0.2 494,651 - DVU0438 0.78 -0.4 494,651 - DVU0438 0.78 -0.2 494,698 - DVU0438 0.80 +0.2 494,703 - DVU0438 0.80 +0.1 494,722 - DVU0438 0.80 +0.0 494,750 + DVU0438 0.81 -0.4 494,757 + DVU0438 0.81 -1.1 494,771 + DVU0438 0.82 -0.7 494,776 + DVU0438 0.82 +0.7 494,784 - DVU0438 0.82 -0.2 494,784 - DVU0438 0.82 -0.0 494,794 + DVU0438 0.83 +0.6 494,802 - DVU0438 0.83 -0.3 494,852 - DVU0438 0.84 +0.5 494,866 + DVU0438 0.85 -0.2 494,886 - DVU0438 0.86 +0.1 494,917 - DVU0438 0.87 +0.4 494,936 - DVU0438 0.87 +0.3 494,943 - DVU0438 0.87 -2.6 495,041 - -0.4 495,041 - +0.5 495,069 - -0.4 495,131 + -0.2 495,190 - +0.2 495,220 + -0.1 495,235 + +0.0 495,243 - -0.6 495,243 - -1.4 495,243 - +0.2 495,308 + -2.2 495,420 + DVU0439 0.16 -0.7 495,421 - DVU0439 0.17 -0.1 495,484 - DVU0439 0.38 +0.9 495,496 + DVU0439 0.43 -0.6 495,515 - DVU0439 0.49 -1.6 495,581 + DVU0439 0.72 -0.7 495,581 + DVU0439 0.72 -1.0 495,866 - -0.1 495,918 + -0.1 495,921 + +0.6 495,949 + -0.1 495,957 - +0.4 496,018 + +0.1 496,023 + -0.7 496,026 - -0.6 496,031 - -0.5 496,031 - +0.4 496,180 + -0.1 496,183 - -0.6 496,194 - -0.2 496,199 + -0.3 496,226 + -0.3 496,234 - +0.3 496,255 - -0.9 496,265 + DVU0440 0.10 -1.3 496,275 + DVU0440 0.11 -0.6 496,313 + DVU0440 0.14 +0.4 496,345 + DVU0440 0.16 +0.0 496,352 - DVU0440 0.17 +0.2 496,368 - DVU0440 0.18 -0.0 496,405 - DVU0440 0.21 -0.2 496,418 - DVU0440 0.22 -0.5 496,422 + DVU0440 0.22 -0.2 496,468 - DVU0440 0.25 -0.6 496,483 - DVU0440 0.26 -0.2 496,505 - DVU0440 0.28 -0.7 496,505 - DVU0440 0.28 -0.2 496,505 - DVU0440 0.28 +0.3 496,507 + DVU0440 0.28 -1.7 496,512 + DVU0440 0.29 +0.2 496,515 - DVU0440 0.29 -0.4 496,550 - DVU0440 0.31 +1.0 496,609 + DVU0440 0.36 -0.3
Or see this region's nucleotide sequence