Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1764

Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1762 and DVU1764 are separated by 793 nucleotidesDVU1764 and thiH are separated by 27 nucleotides DVU1762: DVU1762 - membrane protein, putative (TIGR), at 1,825,786 to 1,826,244 DVU1762 DVU1764: DVU1764 - conserved hypothetical protein (TIGR), at 1,827,038 to 1,827,307 DVU1764 DVU1765: thiH - thiH protein, putative (TIGR), at 1,827,335 to 1,828,729 thiH Position (kb) 1827 1828Strain fitness (log2 ratio) -2 -1 0 1at 1826.132 kb on - strand, within DVU1762at 1826.396 kb on - strandat 1826.420 kb on + strandat 1826.420 kb on + strandat 1826.428 kb on - strandat 1826.442 kb on + strandat 1826.450 kb on - strandat 1826.451 kb on - strandat 1826.451 kb on - strandat 1826.451 kb on - strandat 1826.504 kb on - strandat 1826.672 kb on - strandat 1826.730 kb on + strandat 1826.730 kb on + strandat 1826.814 kb on + strandat 1826.814 kb on + strandat 1826.814 kb on + strandat 1826.814 kb on + strandat 1826.822 kb on - strandat 1826.859 kb on + strandat 1826.867 kb on - strandat 1826.889 kb on - strandat 1826.926 kb on + strandat 1826.950 kb on - strandat 1826.973 kb on - strandat 1826.978 kb on - strandat 1827.014 kb on + strandat 1827.022 kb on - strandat 1827.060 kb on - strandat 1827.097 kb on + strand, within DVU1764at 1827.156 kb on + strand, within DVU1764at 1827.164 kb on - strand, within DVU1764at 1827.281 kb on + strandat 1827.283 kb on + strandat 1827.310 kb on - strandat 1827.386 kb on + strandat 1827.598 kb on + strand, within thiHat 1827.599 kb on - strand, within thiHat 1827.670 kb on - strand, within thiHat 1827.769 kb on - strand, within thiHat 1827.876 kb on + strand, within thiHat 1827.958 kb on - strand, within thiHat 1827.992 kb on + strand, within thiHat 1828.000 kb on - strand, within thiHat 1828.100 kb on - strand, within thiHat 1828.101 kb on + strand, within thiHat 1828.109 kb on - strand, within thiHat 1828.119 kb on - strand, within thiHat 1828.127 kb on - strand, within thiHat 1828.241 kb on - strand, within thiH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM)
remove
1,826,132 - DVU1762 0.75 -1.1
1,826,396 - +1.2
1,826,420 + +0.2
1,826,420 + +0.0
1,826,428 - -0.2
1,826,442 + +0.3
1,826,450 - -0.3
1,826,451 - -0.3
1,826,451 - -0.8
1,826,451 - -0.3
1,826,504 - -0.2
1,826,672 - -1.0
1,826,730 + -0.0
1,826,730 + -0.7
1,826,814 + +0.3
1,826,814 + +0.4
1,826,814 + -0.2
1,826,814 + -0.0
1,826,822 - +0.8
1,826,859 + -1.8
1,826,867 - -0.3
1,826,889 - +0.3
1,826,926 + -0.7
1,826,950 - -0.1
1,826,973 - -0.1
1,826,978 - -0.5
1,827,014 + +0.0
1,827,022 - -0.5
1,827,060 - -0.3
1,827,097 + DVU1764 0.22 -0.6
1,827,156 + DVU1764 0.44 -0.5
1,827,164 - DVU1764 0.47 -0.8
1,827,281 + -0.1
1,827,283 + -0.5
1,827,310 - +0.3
1,827,386 + +0.9
1,827,598 + thiH DVU1765 0.19 +0.1
1,827,599 - thiH DVU1765 0.19 -0.0
1,827,670 - thiH DVU1765 0.24 +0.3
1,827,769 - thiH DVU1765 0.31 -0.5
1,827,876 + thiH DVU1765 0.39 -1.1
1,827,958 - thiH DVU1765 0.45 -0.1
1,827,992 + thiH DVU1765 0.47 -0.4
1,828,000 - thiH DVU1765 0.48 -1.4
1,828,100 - thiH DVU1765 0.55 -0.3
1,828,101 + thiH DVU1765 0.55 +0.4
1,828,109 - thiH DVU1765 0.55 -0.7
1,828,119 - thiH DVU1765 0.56 +0.5
1,828,127 - thiH DVU1765 0.57 -0.2
1,828,241 - thiH DVU1765 0.65 +0.0

Or see this region's nucleotide sequence