Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2494

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
2,573,825	-	livF	Synpcc7942_2492	0.66	-0.9
2,573,828	-	livF	Synpcc7942_2492	0.66	+0.5
2,573,834	-	livF	Synpcc7942_2492	0.67	+1.1
2,573,868	+	livF	Synpcc7942_2492	0.72	+1.0
2,573,881	-	livF	Synpcc7942_2492	0.74	+0.5
2,573,883	+	livF	Synpcc7942_2492	0.74	-1.1
2,573,910	-	livF	Synpcc7942_2492	0.78	+1.9
2,573,942	-	livF	Synpcc7942_2492	0.82	+1.5
2,573,961	-	livF	Synpcc7942_2492	0.85	+1.5
2,574,004	+				-0.7
2,574,014	+				+0.0
2,574,022	+				+0.4
2,574,049	-				+3.5
2,574,066	-				+0.5
2,574,076	-				+0.8
2,574,080	+				-1.5
2,574,110	-				-0.5
2,574,145	+	natA	Synpcc7942_2493	0.11	-0.8
2,574,174	-	natA	Synpcc7942_2493	0.15	-0.5
2,574,193	-	natA	Synpcc7942_2493	0.17	-0.7
2,574,201	-				-0.1
2,574,208	-	natA	Synpcc7942_2493	0.19	+2.8
2,574,244	-	natA	Synpcc7942_2493	0.24	-0.9
2,574,290	+	natA	Synpcc7942_2493	0.30	+0.6
2,574,382	-	natA	Synpcc7942_2493	0.42	-0.9
2,574,400	-	natA	Synpcc7942_2493	0.44	+2.5
2,574,410	-	natA	Synpcc7942_2493	0.46	-0.2
2,574,421	+	natA	Synpcc7942_2493	0.47	+0.8
2,574,455	-	natA	Synpcc7942_2493	0.52	+0.3
2,574,456	-	natA	Synpcc7942_2493	0.52	-0.5
2,574,480	+				-0.5
2,574,523	-	natA	Synpcc7942_2493	0.61	-0.8
2,574,547	-	natA	Synpcc7942_2493	0.64	-2.8
2,574,566	-	natA	Synpcc7942_2493	0.66	+0.3
2,574,584	+	natA	Synpcc7942_2493	0.69	-0.5
2,574,587	-	natA	Synpcc7942_2493	0.69	-0.8
2,574,603	+	natA	Synpcc7942_2493	0.71	+0.4
2,574,607	-	natA	Synpcc7942_2493	0.72	-0.6
2,574,648	-	natA	Synpcc7942_2493	0.77	-1.7
2,574,663	+	natA	Synpcc7942_2493	0.79	+0.8
2,574,671	-	natA	Synpcc7942_2493	0.80	+0.1
2,574,671	-	natA	Synpcc7942_2493	0.80	-2.3
2,574,690	+	natA	Synpcc7942_2493	0.83	+4.4
2,574,695	+	natA	Synpcc7942_2493	0.83	-2.3
2,574,707	+	natA	Synpcc7942_2493	0.85	-0.9
2,574,713	+	natA	Synpcc7942_2493	0.86	+0.8
2,574,715	-	natA	Synpcc7942_2493	0.86	-0.5
2,574,723	+	natA	Synpcc7942_2493	0.87	+1.1
2,574,723	+	natA	Synpcc7942_2493	0.87	-2.7
2,574,723	+	natA	Synpcc7942_2493	0.87	+2.0
2,574,723	+	natA	Synpcc7942_2493	0.87	-0.8
2,574,764	-				+0.2
2,574,771	+				+1.4
2,574,790	-				+0.5
2,574,823	-				+0.5
2,574,839	-				-1.1
2,574,896	-				+1.4
2,574,937	+	livM	Synpcc7942_2494	0.13	-1.1
2,574,942	+	livM	Synpcc7942_2494	0.13	+0.2
2,574,950	-	livM	Synpcc7942_2494	0.14	+1.8
2,574,950	-	livM	Synpcc7942_2494	0.14	+0.3
2,574,953	+	livM	Synpcc7942_2494	0.15	-0.5
2,574,992	-	livM	Synpcc7942_2494	0.19	-1.1
2,574,997	-	livM	Synpcc7942_2494	0.19	+2.8
2,575,007	+	livM	Synpcc7942_2494	0.20	-1.1
2,575,007	+	livM	Synpcc7942_2494	0.20	+1.2
2,575,015	-	livM	Synpcc7942_2494	0.21	-1.8
2,575,017	+	livM	Synpcc7942_2494	0.21	+2.5
2,575,025	-	livM	Synpcc7942_2494	0.22	-0.9
2,575,025	-	livM	Synpcc7942_2494	0.22	-2.5
2,575,025	-	livM	Synpcc7942_2494	0.22	-0.5
2,575,025	-	livM	Synpcc7942_2494	0.22	-1.8
2,575,029	+	livM	Synpcc7942_2494	0.23	-1.1
2,575,035	-	livM	Synpcc7942_2494	0.23	-0.8
2,575,036	+	livM	Synpcc7942_2494	0.23	+0.5
2,575,036	+	livM	Synpcc7942_2494	0.23	-0.1
2,575,037	-	livM	Synpcc7942_2494	0.24	+0.5
2,575,048	+	livM	Synpcc7942_2494	0.25	-2.5
2,575,058	+	livM	Synpcc7942_2494	0.26	+1.3
2,575,065	+	livM	Synpcc7942_2494	0.27	-3.7
2,575,075	-	livM	Synpcc7942_2494	0.28	-0.5
2,575,082	-	livM	Synpcc7942_2494	0.28	+0.5
2,575,083	+	livM	Synpcc7942_2494	0.29	+2.1
2,575,085	+	livM	Synpcc7942_2494	0.29	+0.1
2,575,114	-	livM	Synpcc7942_2494	0.32	+0.2
2,575,119	+	livM	Synpcc7942_2494	0.32	-1.9
2,575,129	+	livM	Synpcc7942_2494	0.34	+0.6
2,575,142	+	livM	Synpcc7942_2494	0.35	+2.3
2,575,152	+	livM	Synpcc7942_2494	0.36	-2.0
2,575,152	+	livM	Synpcc7942_2494	0.36	-1.1
2,575,152	+				-0.5
2,575,160	-	livM	Synpcc7942_2494	0.37	-1.5
2,575,160	-	livM	Synpcc7942_2494	0.37	+0.3
2,575,164	+	livM	Synpcc7942_2494	0.37	+1.5
2,575,176	+	livM	Synpcc7942_2494	0.39	-0.7
2,575,189	-	livM	Synpcc7942_2494	0.40	+0.5
2,575,216	-	livM	Synpcc7942_2494	0.43	+1.3
2,575,218	+	livM	Synpcc7942_2494	0.43	-1.1
2,575,224	+	livM	Synpcc7942_2494	0.44	-1.1
2,575,226	-				-1.1
2,575,250	+	livM	Synpcc7942_2494	0.47	+2.0
2,575,250	+	livM	Synpcc7942_2494	0.47	-1.1
2,575,251	+	livM	Synpcc7942_2494	0.47	+1.4
2,575,258	-	livM	Synpcc7942_2494	0.48	+1.5
2,575,258	-	livM	Synpcc7942_2494	0.48	+2.1
2,575,259	-	livM	Synpcc7942_2494	0.48	-1.7
2,575,261	+	livM	Synpcc7942_2494	0.48	+1.5
2,575,350	+	livM	Synpcc7942_2494	0.57	-0.3
2,575,350	+	livM	Synpcc7942_2494	0.57	-1.7
2,575,350	+	livM	Synpcc7942_2494	0.57	-2.0
2,575,470	+	livM	Synpcc7942_2494	0.70	-1.7
2,575,470	+	livM	Synpcc7942_2494	0.70	+2.2
2,575,472	+	livM	Synpcc7942_2494	0.71	+1.1
2,575,480	-	livM	Synpcc7942_2494	0.72	+0.0
2,575,502	-	livM	Synpcc7942_2494	0.74	+0.0
2,575,502	-	livM	Synpcc7942_2494	0.74	+2.4
2,575,517	+	livM	Synpcc7942_2494	0.76	-0.5
2,575,517	+	livM	Synpcc7942_2494	0.76	-0.5
2,575,517	+	livM	Synpcc7942_2494	0.76	+1.2
2,575,544	+	livM	Synpcc7942_2494	0.78	-2.0
2,575,552	-	livM	Synpcc7942_2494	0.79	+2.1
2,575,552	-	livM	Synpcc7942_2494	0.79	+0.5
2,575,554	+	livM	Synpcc7942_2494	0.80	-1.1
2,575,556	+	livM	Synpcc7942_2494	0.80	+0.2
2,575,556	+	livM	Synpcc7942_2494	0.80	+0.8
2,575,656	+				-1.0
2,575,671	-				+0.9
2,575,676	+				-1.9
2,575,680	-				-0.1
2,575,682	+				-0.7
2,575,692	-				+0.8
2,575,716	+				-1.1
2,575,724	-				-2.1
2,575,732	+				+2.7
2,575,743	+				-0.5
2,575,743	+				+0.8
2,575,743	+				-0.2
2,575,744	+				+1.6
2,575,744	+				+1.5
2,575,744	+				-1.3
2,575,744	+				-1.9
2,575,749	+				-1.5
2,575,751	-				+0.5
2,575,752	-				+3.4
2,575,752	-				+0.5
2,575,752	-				+0.5
2,575,752	-				-1.5
2,575,767	-				+1.5
2,575,776	-				-0.1
2,575,776	-				+0.2
2,575,776	-				-0.5
2,575,776	-				-1.1
2,575,786	-				+0.5
2,575,787	-				-1.1
2,575,799	-				+2.0
2,575,799	-				+0.3
2,575,799	-				-1.1
2,575,800	-				-0.4
2,575,804	+				+2.5
2,575,812	-				-1.8
2,575,821	+				+2.0
2,575,822	-				+0.5
2,575,846	-	natD	Synpcc7942_2495	0.11	-0.7
2,575,884	-	natD	Synpcc7942_2495	0.15	-1.6
2,575,897	+	natD	Synpcc7942_2495	0.16	-0.6
2,575,923	+	natD	Synpcc7942_2495	0.19	+2.1
2,575,923	+	natD	Synpcc7942_2495	0.19	-1.7
2,575,932	-	natD	Synpcc7942_2495	0.20	-0.7
2,575,937	-	natD	Synpcc7942_2495	0.20	-2.3
2,575,946	+	natD	Synpcc7942_2495	0.21	+0.5
2,575,991	+	natD	Synpcc7942_2495	0.26	+2.1
2,576,000	+	natD	Synpcc7942_2495	0.27	+1.5
2,576,092	-	natD	Synpcc7942_2495	0.37	+1.0
2,576,113	+	natD	Synpcc7942_2495	0.39	+1.2
2,576,129	-	natD	Synpcc7942_2495	0.41	+1.5
2,576,148	-	natD	Synpcc7942_2495	0.43	+1.9
2,576,149	+	natD	Synpcc7942_2495	0.43	-1.5
2,576,161	+	natD	Synpcc7942_2495	0.44	-2.9
2,576,196	+	natD	Synpcc7942_2495	0.48	-0.5
2,576,196	+	natD	Synpcc7942_2495	0.48	+2.4
2,576,196	+	natD	Synpcc7942_2495	0.48	-1.1
2,576,204	-	natD	Synpcc7942_2495	0.49	+1.8
2,576,204	-	natD	Synpcc7942_2495	0.49	+1.5
2,576,204	-	natD	Synpcc7942_2495	0.49	-1.1
2,576,204	-	natD	Synpcc7942_2495	0.49	-1.5
2,576,214	-	natD	Synpcc7942_2495	0.50	-0.1
2,576,214	-	natD	Synpcc7942_2495	0.50	+0.5
2,576,219	-	natD	Synpcc7942_2495	0.50	-1.5
2,576,219	-	natD	Synpcc7942_2495	0.50	-1.5
2,576,222	+	natD	Synpcc7942_2495	0.51	-2.5
2,576,230	-	natD	Synpcc7942_2495	0.51	+0.8
2,576,243	-	natD	Synpcc7942_2495	0.53	-0.8
2,576,249	-	natD	Synpcc7942_2495	0.53	-1.1
2,576,253	+	natD	Synpcc7942_2495	0.54	-0.2
2,576,253	+	natD	Synpcc7942_2495	0.54	-0.2
2,576,253	+	natD	Synpcc7942_2495	0.54	+0.1
2,576,253	+	natD	Synpcc7942_2495	0.54	+1.1
2,576,256	-				-0.5
2,576,258	-	natD	Synpcc7942_2495	0.54	+0.5
2,576,261	-	natD	Synpcc7942_2495	0.55	+2.5
2,576,261	-	natD	Synpcc7942_2495	0.55	+0.9
2,576,261	-	natD	Synpcc7942_2495	0.55	+0.5
2,576,263	+	natD	Synpcc7942_2495	0.55	-1.4
2,576,270	-				+1.5
2,576,271	-	natD	Synpcc7942_2495	0.56	-1.1
2,576,282	-	natD	Synpcc7942_2495	0.57	-0.1
2,576,282	-	natD	Synpcc7942_2495	0.57	+0.5
2,576,284	+	natD	Synpcc7942_2495	0.57	+2.1
2,576,357	+	natD	Synpcc7942_2495	0.65	-0.5
2,576,364	-	natD	Synpcc7942_2495	0.66	-2.1
2,576,364	-	natD	Synpcc7942_2495	0.66	+0.6
2,576,364	-	natD	Synpcc7942_2495	0.66	-2.6
2,576,392	+	natD	Synpcc7942_2495	0.69	-1.5
2,576,413	+	natD	Synpcc7942_2495	0.71	-0.3
2,576,413	+	natD	Synpcc7942_2495	0.71	-0.9
2,576,464	-	natD	Synpcc7942_2495	0.76	-0.1
2,576,476	+	natD	Synpcc7942_2495	0.77	+0.8
2,576,479	-	natD	Synpcc7942_2495	0.78	+0.9
2,576,484	-	natD	Synpcc7942_2495	0.78	+0.5
2,576,484	-	natD	Synpcc7942_2495	0.78	+3.8
2,576,486	+	natD	Synpcc7942_2495	0.79	+2.2
2,576,536	+	natD	Synpcc7942_2495	0.84	+0.6
2,576,544	-	natD	Synpcc7942_2495	0.85	+1.5
2,576,592	+	natD	Synpcc7942_2495	0.90	+0.8
2,576,613	+				-2.7
2,576,615	-				-2.5
2,576,621	-				+2.9
2,576,622	-				-2.1
2,576,641	-				+0.5
2,576,641	-				-0.8
2,576,641	-				+0.1
2,576,657	+				-0.5
2,576,657	+				+0.3
2,576,667	-				-1.1
2,576,698	+				-2.5
2,576,698	+				+0.5
2,576,707	+				-2.3