Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2490

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
2,568,969	-		Synpcc7942_2488	0.11	+2.2
2,568,971	+		Synpcc7942_2488	0.11	-2.3
2,568,995	-		Synpcc7942_2488	0.15	+1.6
2,568,998	-		Synpcc7942_2488	0.16	-2.7
2,569,047	+		Synpcc7942_2488	0.24	+3.1
2,569,059	+		Synpcc7942_2488	0.26	-0.8
2,569,060	-		Synpcc7942_2488	0.26	+0.0
2,569,064	+		Synpcc7942_2488	0.26	-1.8
2,569,064	+		Synpcc7942_2488	0.26	+1.5
2,569,072	-		Synpcc7942_2488	0.28	+2.5
2,569,072	-				-0.5
2,569,072	-		Synpcc7942_2488	0.28	-1.3
2,569,072	-		Synpcc7942_2488	0.28	-1.6
2,569,074	+		Synpcc7942_2488	0.28	+0.2
2,569,107	+		Synpcc7942_2488	0.33	-2.1
2,569,113	+		Synpcc7942_2488	0.34	-0.5
2,569,121	-		Synpcc7942_2488	0.36	+1.7
2,569,152	+		Synpcc7942_2488	0.41	+0.4
2,569,261	-		Synpcc7942_2488	0.59	-0.7
2,569,268	-		Synpcc7942_2488	0.60	+2.3
2,569,272	+		Synpcc7942_2488	0.61	-3.2
2,569,274	+				-1.1
2,569,275	-		Synpcc7942_2488	0.61	+0.5
2,569,280	-		Synpcc7942_2488	0.62	-0.9
2,569,282	+		Synpcc7942_2488	0.62	-0.5
2,569,282	+		Synpcc7942_2488	0.62	+2.5
2,569,287	+		Synpcc7942_2488	0.63	-2.3
2,569,324	-		Synpcc7942_2488	0.69	+3.0
2,569,331	+		Synpcc7942_2488	0.70	-1.5
2,569,342	+		Synpcc7942_2488	0.72	+0.3
2,569,342	+		Synpcc7942_2488	0.72	-0.7
2,569,342	+		Synpcc7942_2488	0.72	+0.5
2,569,342	+		Synpcc7942_2488	0.72	-0.8
2,569,350	-		Synpcc7942_2488	0.73	-0.8
2,569,354	+		Synpcc7942_2488	0.74	-0.4
2,569,373	+		Synpcc7942_2488	0.77	+1.8
2,569,373	+		Synpcc7942_2488	0.77	+1.7
2,569,379	-		Synpcc7942_2488	0.78	+1.3
2,569,411	+		Synpcc7942_2488	0.83	-2.1
2,569,430	+		Synpcc7942_2488	0.87	+0.9
2,569,430	-		Synpcc7942_2488	0.87	+0.5
2,569,445	-		Synpcc7942_2488	0.89	+1.0
2,569,446	-		Synpcc7942_2488	0.89	+0.5
2,569,451	-				+1.4
2,569,478	-				+1.4
2,569,560	-				+1.2
2,569,585	-				-2.9
2,569,591	-				-0.3
2,569,593	-				+1.7
2,569,629	-		Synpcc7942_2489	0.13	-2.1
2,569,631	+		Synpcc7942_2489	0.13	-0.0
2,569,633	-		Synpcc7942_2489	0.14	-0.1
2,569,663	+		Synpcc7942_2489	0.25	+2.5
2,569,675	+		Synpcc7942_2489	0.29	-0.8
2,569,682	+		Synpcc7942_2489	0.32	-0.6
2,569,683	-		Synpcc7942_2489	0.32	+1.5
2,569,702	+		Synpcc7942_2489	0.39	-1.0
2,569,703	+		Synpcc7942_2489	0.39	+1.8
2,569,710	-		Synpcc7942_2489	0.42	-1.1
2,569,745	+		Synpcc7942_2489	0.55	-2.3
2,569,753	-		Synpcc7942_2489	0.58	-0.4
2,569,794	+		Synpcc7942_2489	0.72	-2.7
2,569,794	+		Synpcc7942_2489	0.72	+1.1
2,569,802	-		Synpcc7942_2489	0.75	-1.8
2,569,808	+		Synpcc7942_2489	0.78	-2.3
2,569,906	+				+2.1
2,569,917	-				-0.5
2,569,929	-				+1.2
2,569,950	+				+0.5
2,569,979	-				+1.9
2,569,990	+				-0.5
2,569,990	+				+0.5
2,569,993	+				+1.3
2,569,999	+				+0.5
2,570,007	-				+1.3
2,570,007	-				-0.1
2,570,007	-				+1.5
2,570,020	-				-2.0
2,570,043	-				-1.5
2,570,083	+	miaA	Synpcc7942_2490	0.13	-4.3
2,570,083	-	miaA	Synpcc7942_2490	0.13	+0.2
2,570,091	-	miaA	Synpcc7942_2490	0.14	-2.9
2,570,098	-	miaA	Synpcc7942_2490	0.15	-0.8
2,570,107	+	miaA	Synpcc7942_2490	0.16	+0.5
2,570,133	-	miaA	Synpcc7942_2490	0.18	-3.1
2,570,175	-	miaA	Synpcc7942_2490	0.23	-2.2
2,570,181	+	miaA	Synpcc7942_2490	0.24	-3.5
2,570,181	+	miaA	Synpcc7942_2490	0.24	-2.9
2,570,181	+	miaA	Synpcc7942_2490	0.24	-0.3
2,570,181	-	miaA	Synpcc7942_2490	0.24	-2.0
2,570,182	-	miaA	Synpcc7942_2490	0.24	-1.5
2,570,182	-	miaA	Synpcc7942_2490	0.24	-2.8
2,570,189	-	miaA	Synpcc7942_2490	0.24	-1.8
2,570,189	-	miaA	Synpcc7942_2490	0.24	-2.9
2,570,189	-	miaA	Synpcc7942_2490	0.24	-2.1
2,570,189	-	miaA	Synpcc7942_2490	0.24	-2.8
2,570,189	-	miaA	Synpcc7942_2490	0.24	-0.5
2,570,222	+	miaA	Synpcc7942_2490	0.28	+1.7
2,570,222	+	miaA	Synpcc7942_2490	0.28	-3.8
2,570,224	-	miaA	Synpcc7942_2490	0.28	-3.3
2,570,224	-	miaA	Synpcc7942_2490	0.28	-1.1
2,570,230	-	miaA	Synpcc7942_2490	0.29	-4.0
2,570,237	+	miaA	Synpcc7942_2490	0.30	-2.4
2,570,265	-	miaA	Synpcc7942_2490	0.33	-1.5
2,570,308	-	miaA	Synpcc7942_2490	0.37	-3.7
2,570,341	+	miaA	Synpcc7942_2490	0.41	-3.2
2,570,383	+	miaA	Synpcc7942_2490	0.45	-1.2
2,570,391	-	miaA	Synpcc7942_2490	0.46	-0.1
2,570,391	-	miaA	Synpcc7942_2490	0.46	-2.1
2,570,391	-	miaA	Synpcc7942_2490	0.46	-2.7
2,570,391	-	miaA	Synpcc7942_2490	0.46	-1.8
2,570,408	-	miaA	Synpcc7942_2490	0.48	-2.1
2,570,443	+	miaA	Synpcc7942_2490	0.52	-2.5
2,570,443	+	miaA	Synpcc7942_2490	0.52	-2.9
2,570,463	-	miaA	Synpcc7942_2490	0.54	-2.8
2,570,463	-	miaA	Synpcc7942_2490	0.54	-3.8
2,570,463	-	miaA	Synpcc7942_2490	0.54	-3.6
2,570,469	-	miaA	Synpcc7942_2490	0.55	-0.7
2,570,479	+	miaA	Synpcc7942_2490	0.56	-0.7
2,570,533	+	miaA	Synpcc7942_2490	0.62	-2.5
2,570,533	+	miaA	Synpcc7942_2490	0.62	-3.6
2,570,542	-	miaA	Synpcc7942_2490	0.63	-4.1
2,570,542	-	miaA	Synpcc7942_2490	0.63	-1.8
2,570,542	-	miaA	Synpcc7942_2490	0.63	-0.6
2,570,566	+	miaA	Synpcc7942_2490	0.65	-3.7
2,570,566	-	miaA	Synpcc7942_2490	0.65	-2.9
2,570,566	-	miaA	Synpcc7942_2490	0.65	-2.9
2,570,568	+	miaA	Synpcc7942_2490	0.66	-3.7
2,570,568	+	miaA	Synpcc7942_2490	0.66	-0.7
2,570,568	+	miaA	Synpcc7942_2490	0.66	-0.5
2,570,576	-	miaA	Synpcc7942_2490	0.66	-1.9
2,570,576	-	miaA	Synpcc7942_2490	0.66	-2.7
2,570,653	-	miaA	Synpcc7942_2490	0.75	-1.5
2,570,721	-	miaA	Synpcc7942_2490	0.82	-1.2
2,570,726	-	miaA	Synpcc7942_2490	0.83	+0.5
2,570,731	-	miaA	Synpcc7942_2490	0.83	-3.6
2,570,748	-	miaA	Synpcc7942_2490	0.85	-2.9
2,570,779	+	miaA	Synpcc7942_2490	0.88	-0.9
2,570,787	-	miaA	Synpcc7942_2490	0.89	-0.7
2,570,789	+	miaA	Synpcc7942_2490	0.90	-3.5
2,570,789	+	miaA	Synpcc7942_2490	0.90	-4.1
2,570,796	+				-2.7
2,570,797	-				-1.9