Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2365

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
2,429,850	+		Synpcc7942_2363	0.21	-2.6
2,429,858	-		Synpcc7942_2363	0.23	-0.8
2,429,888	-		Synpcc7942_2363	0.31	-1.1
2,429,895	-		Synpcc7942_2363	0.33	+0.5
2,429,910	-		Synpcc7942_2363	0.37	-1.1
2,429,910	-		Synpcc7942_2363	0.37	-2.1
2,430,034	+		Synpcc7942_2363	0.71	-2.1
2,430,037	-		Synpcc7942_2363	0.72	-1.5
2,430,042	-		Synpcc7942_2363	0.73	-0.5
2,430,054	+		Synpcc7942_2363	0.76	-2.3
2,430,059	+		Synpcc7942_2363	0.77	-1.8
2,430,062	-		Synpcc7942_2363	0.78	-4.1
2,430,089	+		Synpcc7942_2363	0.85	-3.1
2,430,096	+		Synpcc7942_2363	0.87	-5.0
2,430,097	-		Synpcc7942_2363	0.88	-2.6
2,430,097	-		Synpcc7942_2363	0.88	-2.8
2,430,116	+				-1.5
2,430,123	+				-1.1
2,430,131	-				-0.5
2,430,161	-				-1.1
2,430,170	-				-0.5
2,430,181	+				-1.5
2,430,186	+				-1.8
2,430,189	-				-3.5
2,430,191	+				-1.1
2,430,192	-				-2.8
2,430,192	-				-2.8
2,430,209	-				-1.5
2,430,264	+		Synpcc7942_2364	0.17	-1.5
2,430,297	+		Synpcc7942_2364	0.22	-2.3
2,430,331	+		Synpcc7942_2364	0.28	-0.8
2,430,333	+		Synpcc7942_2364	0.28	-0.5
2,430,341	-		Synpcc7942_2364	0.30	+0.5
2,430,351	-		Synpcc7942_2364	0.31	+1.8
2,430,378	+		Synpcc7942_2364	0.36	+1.8
2,430,379	+		Synpcc7942_2364	0.36	+0.2
2,430,379	+		Synpcc7942_2364	0.36	+3.0
2,430,435	+		Synpcc7942_2364	0.45	+0.8
2,430,448	+		Synpcc7942_2364	0.47	+0.5
2,430,455	-		Synpcc7942_2364	0.48	+0.7
2,430,455	-		Synpcc7942_2364	0.48	+0.7
2,430,456	-		Synpcc7942_2364	0.49	-2.6
2,430,456	-		Synpcc7942_2364	0.49	+1.3
2,430,493	+		Synpcc7942_2364	0.55	+0.5
2,430,501	-		Synpcc7942_2364	0.56	+1.7
2,430,515	+		Synpcc7942_2364	0.58	-0.1
2,430,525	+		Synpcc7942_2364	0.60	-1.5
2,430,551	-		Synpcc7942_2364	0.64	+2.2
2,430,586	+		Synpcc7942_2364	0.70	-0.6
2,430,621	+		Synpcc7942_2364	0.76	+0.5
2,430,648	-		Synpcc7942_2364	0.80	-1.1
2,430,651	+		Synpcc7942_2364	0.81	+0.7
2,430,659	-		Synpcc7942_2364	0.82	-0.5
2,430,675	-		Synpcc7942_2364	0.85	-2.6
2,430,679	+		Synpcc7942_2364	0.85	-0.3
2,430,708	-				+0.2
2,430,722	+				+2.5
2,430,744	+				-1.4
2,430,762	+				-0.1
2,430,768	+				+1.1
2,430,794	+				-4.0
2,430,794	+				+0.5
2,430,802	-				-0.5
2,430,802	-				-3.3
2,430,805	+				-0.1
2,430,815	+				-2.3
2,430,820	-				-1.1
2,430,877	-				-2.1
2,430,881	-				-2.5
2,430,923	-				-1.6
2,430,925	-				-1.5
2,430,970	-				-2.6
2,431,007	+	prfC	Synpcc7942_2365	0.10	-1.1
2,431,055	+				+3.1
2,431,065	+	prfC	Synpcc7942_2365	0.14	-0.5
2,431,078	-	prfC	Synpcc7942_2365	0.14	+0.5
2,431,101	+	prfC	Synpcc7942_2365	0.16	-1.5
2,431,109	+	prfC	Synpcc7942_2365	0.16	+1.2
2,431,109	-	prfC	Synpcc7942_2365	0.16	+1.3
2,431,109	-	prfC	Synpcc7942_2365	0.16	-1.5
2,431,123	+	prfC	Synpcc7942_2365	0.17	-1.5
2,431,177	-	prfC	Synpcc7942_2365	0.20	-0.5
2,431,194	+	prfC	Synpcc7942_2365	0.21	+0.1
2,431,240	+	prfC	Synpcc7942_2365	0.24	-0.8
2,431,267	+	prfC	Synpcc7942_2365	0.26	+1.0
2,431,298	+	prfC	Synpcc7942_2365	0.27	+1.7
2,431,369	+	prfC	Synpcc7942_2365	0.32	+0.3
2,431,386	+	prfC	Synpcc7942_2365	0.33	-2.4
2,431,387	-	prfC	Synpcc7942_2365	0.33	-1.1
2,431,387	-	prfC	Synpcc7942_2365	0.33	-0.8
2,431,425	+	prfC	Synpcc7942_2365	0.35	+0.5
2,431,465	+	prfC	Synpcc7942_2365	0.37	+0.5
2,431,483	+	prfC	Synpcc7942_2365	0.39	+0.5
2,431,508	+	prfC	Synpcc7942_2365	0.40	-4.1
2,431,508	+	prfC	Synpcc7942_2365	0.40	-0.5
2,431,509	+	prfC	Synpcc7942_2365	0.40	-0.1
2,431,516	-	prfC	Synpcc7942_2365	0.41	+0.5
2,431,516	-	prfC	Synpcc7942_2365	0.41	-1.8
2,431,516	-	prfC	Synpcc7942_2365	0.41	-3.9
2,431,519	+	prfC	Synpcc7942_2365	0.41	-2.2
2,431,580	+	prfC	Synpcc7942_2365	0.44	-0.3
2,431,602	+	prfC	Synpcc7942_2365	0.46	-2.3
2,431,622	-	prfC	Synpcc7942_2365	0.47	-2.3
2,431,651	+	prfC	Synpcc7942_2365	0.49	-1.7
2,431,674	+				+0.5
2,431,703	+	prfC	Synpcc7942_2365	0.52	-0.5
2,431,703	+	prfC	Synpcc7942_2365	0.52	-0.1
2,431,703	+	prfC	Synpcc7942_2365	0.52	-0.8
2,431,711	-	prfC	Synpcc7942_2365	0.52	+1.5
2,431,722	+	prfC	Synpcc7942_2365	0.53	-0.5
2,431,722	+	prfC	Synpcc7942_2365	0.53	-2.5
2,431,722	+	prfC	Synpcc7942_2365	0.53	+0.3
2,431,725	-	prfC	Synpcc7942_2365	0.53	-1.5
2,431,725	-	prfC	Synpcc7942_2365	0.53	+2.0
2,431,743	-	prfC	Synpcc7942_2365	0.54	-2.1
2,431,757	+				-2.3
2,431,767	+	prfC	Synpcc7942_2365	0.56	-2.6
2,431,767	+	prfC	Synpcc7942_2365	0.56	+0.8
2,431,769	+	prfC	Synpcc7942_2365	0.56	-0.5
2,431,769	+	prfC	Synpcc7942_2365	0.56	-1.8
2,431,846	+	prfC	Synpcc7942_2365	0.60	-1.5
2,431,854	-	prfC	Synpcc7942_2365	0.61	-2.3
2,431,870	+	prfC	Synpcc7942_2365	0.62	-2.1
2,431,870	+	prfC	Synpcc7942_2365	0.62	-1.5
2,431,870	+	prfC	Synpcc7942_2365	0.62	-0.5
2,431,870	+	prfC	Synpcc7942_2365	0.62	-0.5
2,431,870	+	prfC	Synpcc7942_2365	0.62	-0.5
2,431,878	-	prfC	Synpcc7942_2365	0.62	+1.0
2,431,899	+	prfC	Synpcc7942_2365	0.63	+0.0
2,431,923	+	prfC	Synpcc7942_2365	0.65	-2.6
2,431,960	-	prfC	Synpcc7942_2365	0.67	+1.3
2,431,971	-	prfC	Synpcc7942_2365	0.68	+1.5
2,431,987	-	prfC	Synpcc7942_2365	0.69	-2.1
2,431,994	-	prfC	Synpcc7942_2365	0.69	+0.9
2,432,041	+	prfC	Synpcc7942_2365	0.72	-1.5
2,432,045	+	prfC	Synpcc7942_2365	0.72	+0.5
2,432,097	+	prfC	Synpcc7942_2365	0.75	+0.1
2,432,105	-	prfC	Synpcc7942_2365	0.76	-2.5
2,432,113	+	prfC	Synpcc7942_2365	0.76	+0.7
2,432,121	-	prfC	Synpcc7942_2365	0.77	-1.1
2,432,125	+	prfC	Synpcc7942_2365	0.77	-2.1
2,432,128	-	prfC	Synpcc7942_2365	0.77	-1.0
2,432,136	+	prfC	Synpcc7942_2365	0.78	-1.1
2,432,152	+	prfC	Synpcc7942_2365	0.79	-0.5
2,432,180	+	prfC	Synpcc7942_2365	0.80	+1.7
2,432,227	-	prfC	Synpcc7942_2365	0.83	+0.8
2,432,263	-	prfC	Synpcc7942_2365	0.85	+0.5
2,432,293	+	prfC	Synpcc7942_2365	0.87	-1.1
2,432,313	+	prfC	Synpcc7942_2365	0.88	-0.1
2,432,315	+	prfC	Synpcc7942_2365	0.88	-2.1
2,432,353	+				-1.1
2,432,356	+				+0.5
2,432,371	+				-1.1
2,432,380	+				-1.1
2,432,380	+				-1.8
2,432,396	+				-1.8
2,432,396	+				-1.1
2,432,415	+				-0.2
2,432,512	-				+0.5
2,432,515	+				+0.4
2,432,515	+				-3.4
2,432,523	-				-0.4
2,432,541	+				+1.4
2,432,544	+				-0.5
2,432,594	-				+0.4
2,432,601	+				+1.7
2,432,601	-				+0.3
2,432,606	-				-0.8
2,432,606	-				-1.8
2,432,609	-				-0.5
2,432,645	-		Synpcc7942_2366	0.16	-1.1
2,432,663	+		Synpcc7942_2366	0.22	-0.3
2,432,697	+		Synpcc7942_2366	0.34	-0.9
2,432,699	+		Synpcc7942_2366	0.35	+2.5
2,432,746	-		Synpcc7942_2366	0.52	+1.1
2,432,748	+		Synpcc7942_2366	0.53	+1.0
2,432,754	+		Synpcc7942_2366	0.55	+0.3
2,432,754	+		Synpcc7942_2366	0.55	+1.3
2,432,754	+		Synpcc7942_2366	0.55	-0.1
2,432,754	+		Synpcc7942_2366	0.55	-0.5
2,432,756	-		Synpcc7942_2366	0.56	-0.5
2,432,756	-		Synpcc7942_2366	0.56	+2.7
2,432,762	-		Synpcc7942_2366	0.58	-0.5
2,432,762	-				+3.7
2,432,787	-		Synpcc7942_2366	0.67	+0.9
2,432,787	-				-0.5
2,432,793	-		Synpcc7942_2366	0.69	-1.2
2,432,795	-		Synpcc7942_2366	0.70	-0.7
2,432,856	-				-0.5
2,432,908	+				-0.7
2,432,908	+				+2.4
2,432,910	+				+0.3
2,432,916	-				+1.2
2,432,956	+				+0.5
2,432,964	-				-1.3
2,432,964	-				-0.1
2,432,964	-				-2.9
2,432,964	-				+0.8
2,432,985	+				+0.6
2,432,985	+				-2.3
2,433,019	+		Synpcc7942_2367	0.13	-1.8
2,433,034	-		Synpcc7942_2367	0.16	-1.9
2,433,053	+		Synpcc7942_2367	0.20	-2.3
2,433,053	-		Synpcc7942_2367	0.20	-2.1
2,433,059	-		Synpcc7942_2367	0.21	+1.3
2,433,059	-		Synpcc7942_2367	0.21	-2.1
2,433,066	-		Synpcc7942_2367	0.23	-1.6
2,433,079	+				-1.5
2,433,080	+		Synpcc7942_2367	0.26	+0.5
2,433,117	+				-1.1
2,433,138	+		Synpcc7942_2367	0.37	-3.3
2,433,143	+		Synpcc7942_2367	0.38	-1.5
2,433,151	-		Synpcc7942_2367	0.40	-1.7
2,433,151	-		Synpcc7942_2367	0.40	+0.3
2,433,194	+		Synpcc7942_2367	0.48	-1.9
2,433,194	+		Synpcc7942_2367	0.48	-3.5
2,433,220	+		Synpcc7942_2367	0.53	-0.3
2,433,220	+		Synpcc7942_2367	0.53	+0.5
2,433,228	-		Synpcc7942_2367	0.55	-0.6
2,433,228	-		Synpcc7942_2367	0.55	-1.0
2,433,228	-		Synpcc7942_2367	0.55	-0.9
2,433,245	+		Synpcc7942_2367	0.58	-0.5
2,433,329	+		Synpcc7942_2367	0.75	-2.9
2,433,329	+		Synpcc7942_2367	0.75	+0.8
2,433,337	-		Synpcc7942_2367	0.77	-0.2
2,433,343	-		Synpcc7942_2367	0.78	-1.1
2,433,343	-		Synpcc7942_2367	0.78	-1.8
2,433,355	+		Synpcc7942_2367	0.80	-2.8
2,433,358	-		Synpcc7942_2367	0.81	-1.0
2,433,395	+		Synpcc7942_2367	0.88	+1.2
2,433,443	-				+1.0
2,433,479	-				-2.1