Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2324

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
2,390,617	+				-0.5
2,390,657	-				+1.6
2,390,960	+				+1.4
2,391,029	+				-1.8
2,391,049	-				-0.1
2,391,076	+				-0.3
2,391,076	-				-2.1
2,391,107	-				+1.8
2,391,138	+	grxC	Synpcc7942_2323	0.11	+0.5
2,391,144	+	grxC	Synpcc7942_2323	0.13	+3.2
2,391,149	+	grxC	Synpcc7942_2323	0.15	+0.3
2,391,177	-	grxC	Synpcc7942_2323	0.26	+0.5
2,391,229	-	grxC	Synpcc7942_2323	0.45	+1.0
2,391,244	-	grxC	Synpcc7942_2323	0.51	+0.3
2,391,294	-	grxC	Synpcc7942_2323	0.70	-1.5
2,391,302	-	grxC	Synpcc7942_2323	0.73	-0.1
2,391,316	+	grxC	Synpcc7942_2323	0.78	+2.3
2,391,344	-	grxC	Synpcc7942_2323	0.89	+0.3
2,391,351	+				+0.1
2,391,376	-				-0.8
2,391,427	-				+0.5
2,391,445	-				-3.1
2,391,447	+				-1.7
2,391,447	+				-0.5
2,391,549	+	gshB	Synpcc7942_2324	0.19	-1.5
2,391,549	+	gshB	Synpcc7942_2324	0.19	-2.1
2,391,570	-	gshB	Synpcc7942_2324	0.21	-0.5
2,391,577	+	gshB	Synpcc7942_2324	0.21	-2.6
2,391,672	+	gshB	Synpcc7942_2324	0.31	+4.5
2,391,672	+	gshB	Synpcc7942_2324	0.31	-1.5
2,391,672	+	gshB	Synpcc7942_2324	0.31	-1.6
2,391,672	+	gshB	Synpcc7942_2324	0.31	-2.3
2,391,672	+	gshB	Synpcc7942_2324	0.31	-3.5
2,391,722	-	gshB	Synpcc7942_2324	0.36	-1.8
2,391,790	-	gshB	Synpcc7942_2324	0.43	-2.3
2,391,813	-	gshB	Synpcc7942_2324	0.46	-0.5
2,391,817	-	gshB	Synpcc7942_2324	0.46	-1.6
2,391,825	+	gshB	Synpcc7942_2324	0.47	-2.4
2,391,859	-	gshB	Synpcc7942_2324	0.50	+1.1
2,391,869	-	gshB	Synpcc7942_2324	0.51	-1.1
2,391,869	-	gshB	Synpcc7942_2324	0.51	-3.8
2,391,937	-	gshB	Synpcc7942_2324	0.58	-2.1
2,391,957	+	gshB	Synpcc7942_2324	0.60	-0.5
2,391,957	+	gshB	Synpcc7942_2324	0.60	-0.9
2,391,972	-	gshB	Synpcc7942_2324	0.62	-1.8
2,391,989	+	gshB	Synpcc7942_2324	0.64	-2.9
2,391,997	-	gshB	Synpcc7942_2324	0.65	-1.8
2,392,007	+	gshB	Synpcc7942_2324	0.66	-1.5
2,392,010	-	gshB	Synpcc7942_2324	0.66	-2.3
2,392,034	-	gshB	Synpcc7942_2324	0.68	-1.9
2,392,039	-	gshB	Synpcc7942_2324	0.69	-1.5
2,392,044	+	gshB	Synpcc7942_2324	0.69	-2.5
2,392,052	-	gshB	Synpcc7942_2324	0.70	-0.9
2,392,053	-	gshB	Synpcc7942_2324	0.70	-1.5
2,392,112	+	gshB	Synpcc7942_2324	0.76	-0.8
2,392,112	+	gshB	Synpcc7942_2324	0.76	-0.5
2,392,120	-	gshB	Synpcc7942_2324	0.77	-1.5
2,392,120	-	gshB	Synpcc7942_2324	0.77	+1.6
2,392,120	-	gshB	Synpcc7942_2324	0.77	-1.1
2,392,120	-	gshB	Synpcc7942_2324	0.77	-2.7
2,392,120	-	gshB	Synpcc7942_2324	0.77	-2.8
2,392,151	-	gshB	Synpcc7942_2324	0.80	-2.5
2,392,190	+	gshB	Synpcc7942_2324	0.84	-1.5
2,392,209	-	gshB	Synpcc7942_2324	0.86	-1.5
2,392,209	-	gshB	Synpcc7942_2324	0.86	-2.0
2,392,209	-	gshB	Synpcc7942_2324	0.86	-1.5
2,392,209	-	gshB	Synpcc7942_2324	0.86	-1.8
2,392,230	-	gshB	Synpcc7942_2324	0.89	-1.5
2,392,230	-	gshB	Synpcc7942_2324	0.89	+0.5
2,392,296	+				-0.5
2,392,334	+				+0.5
2,392,335	+				+0.4
2,392,335	+				+0.5
2,392,343	-				-1.8
2,392,343	-				+1.5
2,392,343	-				-2.1
2,392,348	-				+0.5
2,392,348	-				-0.5
2,392,405	+		Synpcc7942_2325	0.10	+1.3
2,392,413	+		Synpcc7942_2325	0.11	+1.5
2,392,423	-		Synpcc7942_2325	0.12	-1.8
2,392,431	-		Synpcc7942_2325	0.14	+1.5
2,392,434	+		Synpcc7942_2325	0.14	-0.1
2,392,442	-		Synpcc7942_2325	0.15	+1.1
2,392,442	-		Synpcc7942_2325	0.15	-1.1
2,392,490	-		Synpcc7942_2325	0.21	+0.5
2,392,513	-		Synpcc7942_2325	0.24	+0.1
2,392,539	+		Synpcc7942_2325	0.28	+0.6
2,392,547	-		Synpcc7942_2325	0.29	+0.5
2,392,597	-		Synpcc7942_2325	0.35	-0.1
2,392,600	+		Synpcc7942_2325	0.36	-2.1
2,392,608	-		Synpcc7942_2325	0.37	-1.1
2,392,676	+		Synpcc7942_2325	0.45	-1.5
2,392,709	+		Synpcc7942_2325	0.50	+1.5
2,392,713	-		Synpcc7942_2325	0.50	+1.4
2,392,713	-		Synpcc7942_2325	0.50	-0.9
2,392,713	-		Synpcc7942_2325	0.50	-2.5
2,392,767	+		Synpcc7942_2325	0.57	+1.2
2,392,794	-		Synpcc7942_2325	0.61	+0.7
2,392,821	-		Synpcc7942_2325	0.64	-2.3
2,392,833	+		Synpcc7942_2325	0.66	-1.6
2,392,834	+		Synpcc7942_2325	0.66	-0.1
2,392,842	-		Synpcc7942_2325	0.67	+1.1
2,392,848	-		Synpcc7942_2325	0.68	+1.7
2,392,868	+		Synpcc7942_2325	0.70	-0.5
2,392,917	+		Synpcc7942_2325	0.77	+0.3
2,392,978	-		Synpcc7942_2325	0.85	+0.1
2,392,999	+		Synpcc7942_2325	0.88	-1.5
2,393,000	-		Synpcc7942_2325	0.88	+0.3
2,393,014	+		Synpcc7942_2325	0.89	+0.3
2,393,046	+				+1.2
2,393,046	+				+0.9
2,393,054	-				-0.5
2,393,054	-				+3.1
2,393,151	+				+0.5
2,393,151	+				+1.3
2,393,151	+				-0.2
2,393,156	+				+2.1
2,393,164	-				-0.2
2,393,166	+				-0.3
2,393,174	-				-0.5
2,393,193	-				+0.2
2,393,193	-				-2.3
2,393,200	-				+0.5
2,393,206	+				+4.0
2,393,206	+				-0.5
2,393,234	-				-0.5
2,393,236	+				+1.3
2,393,245	+				+0.8
2,393,250	+				+0.8
2,393,250	+				-0.8
2,393,250	+				+3.5
2,393,250	+				+0.2
2,393,250	+				-1.8
2,393,258	-				-0.8
2,393,258	-				+1.8
2,393,269	+				-0.5
2,393,269	+				+0.3
2,393,279	-				+2.5
2,393,296	+				-2.1
2,393,304	-				-4.2
2,393,324	-				-1.1