Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2295

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
2,364,013	-		Synpcc7942_2293	0.76	-0.5
2,364,031	+		Synpcc7942_2293	0.80	-1.8
2,364,047	+		Synpcc7942_2293	0.84	-1.1
2,364,054	-		Synpcc7942_2293	0.85	+0.7
2,364,055	-		Synpcc7942_2293	0.86	-0.3
2,364,114	-				+1.4
2,364,122	-				+2.5
2,364,142	+				-0.7
2,364,144	-				+0.7
2,364,156	-				+0.5
2,364,265	+		Synpcc7942_2294	0.14	+2.1
2,364,265	+		Synpcc7942_2294	0.14	+2.0
2,364,271	-		Synpcc7942_2294	0.14	-1.5
2,364,273	-		Synpcc7942_2294	0.14	+1.3
2,364,273	-		Synpcc7942_2294	0.14	+2.9
2,364,273	-		Synpcc7942_2294	0.14	+2.4
2,364,273	-		Synpcc7942_2294	0.14	+2.8
2,364,292	+		Synpcc7942_2294	0.17	+1.4
2,364,292	+		Synpcc7942_2294	0.17	+0.6
2,364,293	-		Synpcc7942_2294	0.17	+0.3
2,364,300	-		Synpcc7942_2294	0.18	+1.6
2,364,302	+		Synpcc7942_2294	0.18	-0.5
2,364,346	-		Synpcc7942_2294	0.23	+0.8
2,364,348	-		Synpcc7942_2294	0.23	+3.0
2,364,358	+		Synpcc7942_2294	0.25	+0.3
2,364,365	-		Synpcc7942_2294	0.25	+1.6
2,364,366	-		Synpcc7942_2294	0.26	-0.5
2,364,366	-		Synpcc7942_2294	0.26	-0.2
2,364,388	+		Synpcc7942_2294	0.28	+0.7
2,364,388	+		Synpcc7942_2294	0.28	+0.3
2,364,389	-		Synpcc7942_2294	0.28	+1.1
2,364,396	+		Synpcc7942_2294	0.29	+2.1
2,364,396	-		Synpcc7942_2294	0.29	+0.9
2,364,406	-		Synpcc7942_2294	0.30	+1.0
2,364,420	-		Synpcc7942_2294	0.32	+2.5
2,364,421	-		Synpcc7942_2294	0.32	-1.3
2,364,426	+		Synpcc7942_2294	0.33	+0.9
2,364,433	+		Synpcc7942_2294	0.34	+5.8
2,364,441	-		Synpcc7942_2294	0.35	+0.2
2,364,447	+				+0.5
2,364,455	-		Synpcc7942_2294	0.36	-1.1
2,364,460	+		Synpcc7942_2294	0.37	-0.5
2,364,470	+		Synpcc7942_2294	0.38	+2.6
2,364,470	+		Synpcc7942_2294	0.38	+1.5
2,364,470	+		Synpcc7942_2294	0.38	+1.1
2,364,478	-		Synpcc7942_2294	0.39	+0.5
2,364,480	+		Synpcc7942_2294	0.39	+3.0
2,364,500	+		Synpcc7942_2294	0.42	+1.8
2,364,508	-		Synpcc7942_2294	0.43	+1.1
2,364,513	-		Synpcc7942_2294	0.43	+2.1
2,364,529	+		Synpcc7942_2294	0.45	+3.1
2,364,529	+		Synpcc7942_2294	0.45	+0.1
2,364,535	+		Synpcc7942_2294	0.46	+3.7
2,364,535	-		Synpcc7942_2294	0.46	+1.3
2,364,544	-		Synpcc7942_2294	0.47	-1.1
2,364,587	-		Synpcc7942_2294	0.52	+2.1
2,364,589	+		Synpcc7942_2294	0.52	+2.6
2,364,614	+		Synpcc7942_2294	0.55	+0.7
2,364,614	+		Synpcc7942_2294	0.55	+0.0
2,364,614	+		Synpcc7942_2294	0.55	+0.2
2,364,637	+		Synpcc7942_2294	0.58	+2.2
2,364,639	+		Synpcc7942_2294	0.58	-1.5
2,364,639	+		Synpcc7942_2294	0.58	+1.3
2,364,639	+		Synpcc7942_2294	0.58	-0.3
2,364,639	+		Synpcc7942_2294	0.58	+1.5
2,364,639	+		Synpcc7942_2294	0.58	+3.1
2,364,639	+		Synpcc7942_2294	0.58	-0.5
2,364,645	-		Synpcc7942_2294	0.59	+3.9
2,364,647	-		Synpcc7942_2294	0.59	+2.2
2,364,647	-		Synpcc7942_2294	0.59	+1.5
2,364,647	-		Synpcc7942_2294	0.59	-2.8
2,364,705	+		Synpcc7942_2294	0.66	+3.5
2,364,739	+		Synpcc7942_2294	0.70	-1.5
2,364,747	-		Synpcc7942_2294	0.71	+3.0
2,364,756	+		Synpcc7942_2294	0.72	+3.7
2,364,757	-		Synpcc7942_2294	0.72	+1.2
2,364,787	-		Synpcc7942_2294	0.76	+2.9
2,364,802	+		Synpcc7942_2294	0.78	+0.6
2,364,802	+		Synpcc7942_2294	0.78	-2.0
2,364,810	+		Synpcc7942_2294	0.79	+1.9
2,364,810	-		Synpcc7942_2294	0.79	-3.0
2,364,810	-		Synpcc7942_2294	0.79	+2.1
2,364,810	-		Synpcc7942_2294	0.79	+1.9
2,364,810	-		Synpcc7942_2294	0.79	+0.6
2,364,810	-		Synpcc7942_2294	0.79	+0.6
2,364,810	-		Synpcc7942_2294	0.79	+2.8
2,364,810	-		Synpcc7942_2294	0.79	+0.2
2,364,835	+		Synpcc7942_2294	0.82	+2.4
2,364,851	+		Synpcc7942_2294	0.84	+0.5
2,364,899	-		Synpcc7942_2294	0.89	+1.2
2,364,923	+				-0.7
2,364,926	-				-0.5
2,364,977	+				+2.0
2,364,985	-				-2.3
2,364,985	-				+0.8
2,364,997	+				+2.8
2,365,007	+				+2.1
2,365,012	+				+1.7
2,365,015	-				+2.6
2,365,015	-				+1.6
2,365,015	-				+3.8
2,365,018	+				+0.5
2,365,052	+				+2.3
2,365,052	+				+2.3
2,365,060	-				+1.4
2,365,074	+				+1.4
2,365,082	-				+2.8
2,365,088	-				+0.5
2,365,113	-		Synpcc7942_2295	0.11	+1.1
2,365,157	-		Synpcc7942_2295	0.15	-0.1
2,365,191	+		Synpcc7942_2295	0.18	+1.0
2,365,191	+		Synpcc7942_2295	0.18	-1.5
2,365,214	+		Synpcc7942_2295	0.20	+3.4
2,365,258	+		Synpcc7942_2295	0.24	+1.2
2,365,259	-		Synpcc7942_2295	0.25	+2.3
2,365,282	-		Synpcc7942_2295	0.27	-1.4
2,365,287	-		Synpcc7942_2295	0.27	+0.9
2,365,331	-		Synpcc7942_2295	0.31	+0.5
2,365,334	-		Synpcc7942_2295	0.31	+0.3
2,365,361	+		Synpcc7942_2295	0.34	+1.4
2,365,369	-		Synpcc7942_2295	0.35	+1.3
2,365,371	+		Synpcc7942_2295	0.35	-0.8
2,365,385	+		Synpcc7942_2295	0.36	+3.5
2,365,388	-		Synpcc7942_2295	0.36	+1.9
2,365,398	-		Synpcc7942_2295	0.37	+0.9
2,365,398	-		Synpcc7942_2295	0.37	+3.3
2,365,398	-		Synpcc7942_2295	0.37	+0.5
2,365,543	-		Synpcc7942_2295	0.50	+3.8
2,365,543	-		Synpcc7942_2295	0.50	+0.8
2,365,549	+		Synpcc7942_2295	0.51	-0.7
2,365,549	+		Synpcc7942_2295	0.51	+0.7
2,365,549	+		Synpcc7942_2295	0.51	+3.7
2,365,557	-		Synpcc7942_2295	0.52	+2.7
2,365,557	-		Synpcc7942_2295	0.52	+1.3
2,365,557	-		Synpcc7942_2295	0.52	+0.3
2,365,558	-		Synpcc7942_2295	0.52	+1.9
2,365,564	-		Synpcc7942_2295	0.52	+3.1
2,365,564	-		Synpcc7942_2295	0.52	+2.0
2,365,574	-		Synpcc7942_2295	0.53	-1.1
2,365,574	-		Synpcc7942_2295	0.53	+2.3
2,365,652	-		Synpcc7942_2295	0.60	+2.3
2,365,669	+		Synpcc7942_2295	0.62	+3.4
2,365,671	+		Synpcc7942_2295	0.62	+0.5
2,365,674	-		Synpcc7942_2295	0.62	+1.9
2,365,707	+				+0.5
2,365,743	+		Synpcc7942_2295	0.68	+1.1
2,365,743	+		Synpcc7942_2295	0.68	+1.7
2,365,744	-		Synpcc7942_2295	0.68	+0.3
2,365,751	-		Synpcc7942_2295	0.69	+1.9
2,365,756	-		Synpcc7942_2295	0.70	-2.1
2,365,764	-		Synpcc7942_2295	0.70	-0.1
2,365,766	+		Synpcc7942_2295	0.70	+3.0
2,365,785	+		Synpcc7942_2295	0.72	+3.8
2,365,793	-		Synpcc7942_2295	0.73	-2.3
2,365,806	+		Synpcc7942_2295	0.74	+2.7
2,365,814	-		Synpcc7942_2295	0.75	+4.4
2,365,817	+		Synpcc7942_2295	0.75	+0.5
2,365,847	+		Synpcc7942_2295	0.78	+0.7
2,365,848	+				+2.5
2,365,885	-		Synpcc7942_2295	0.81	+1.5
2,365,922	-		Synpcc7942_2295	0.85	+2.9
2,365,936	+		Synpcc7942_2295	0.86	+2.3
2,365,944	+		Synpcc7942_2295	0.87	+1.8
2,365,944	-		Synpcc7942_2295	0.87	+3.6
2,365,944	-		Synpcc7942_2295	0.87	+0.6
2,365,953	-		Synpcc7942_2295	0.87	+4.4
2,365,965	+		Synpcc7942_2295	0.88	+0.9
2,366,015	+				+1.7
2,366,022	-				+2.9
2,366,027	+				+1.5
2,366,051	+				+0.9
2,366,051	+				-1.1
2,366,051	+				-1.3
2,366,051	+				-2.5
2,366,051	+				+0.5
2,366,059	-				-1.5
2,366,059	-				+2.0
2,366,059	-				+2.9
2,366,059	-				+0.2
2,366,091	-				+0.5
2,366,145	+				+2.5
2,366,145	+				+2.2
2,366,160	+				-0.3
2,366,161	-				-0.3
2,366,182	-				-0.1
2,366,182	-				+2.6
2,366,182	-				+1.1
2,366,183	-				+0.5
2,366,194	-				-1.5
2,366,228	-	glnA	Synpcc7942_2296	0.12	+1.8
2,366,233	+	glnA	Synpcc7942_2296	0.12	+2.0
2,366,233	+	glnA	Synpcc7942_2296	0.12	+1.1
2,366,243	+	glnA	Synpcc7942_2296	0.13	+1.7
2,366,243	+	glnA	Synpcc7942_2296	0.13	+0.8
2,366,243	+	glnA	Synpcc7942_2296	0.13	+2.4
2,366,243	+	glnA	Synpcc7942_2296	0.13	-0.3
2,366,243	+	glnA	Synpcc7942_2296	0.13	+1.4
2,366,243	+	glnA	Synpcc7942_2296	0.13	-1.1
2,366,248	+	glnA	Synpcc7942_2296	0.13	+2.3
2,366,248	+	glnA	Synpcc7942_2296	0.13	-1.1
2,366,251	-	glnA	Synpcc7942_2296	0.14	-0.5
2,366,251	-	glnA	Synpcc7942_2296	0.14	+0.4
2,366,262	+	glnA	Synpcc7942_2296	0.15	-1.1
2,366,267	+	glnA	Synpcc7942_2296	0.15	+0.3
2,366,267	+	glnA	Synpcc7942_2296	0.15	+0.0
2,366,267	+	glnA	Synpcc7942_2296	0.15	-1.8
2,366,275	-	glnA	Synpcc7942_2296	0.16	+0.0
2,366,275	-	glnA	Synpcc7942_2296	0.16	-1.5
2,366,307	-	glnA	Synpcc7942_2296	0.18	-1.8
2,366,361	+	glnA	Synpcc7942_2296	0.22	+0.5
2,366,366	+	glnA	Synpcc7942_2296	0.23	+0.5
2,366,367	+	glnA	Synpcc7942_2296	0.23	-1.6
2,366,369	-	glnA	Synpcc7942_2296	0.23	-0.5
2,366,369	-	glnA	Synpcc7942_2296	0.23	+1.2
2,366,374	-	glnA	Synpcc7942_2296	0.23	+1.0
2,366,379	+	glnA	Synpcc7942_2296	0.24	-0.1
2,366,428	+	glnA	Synpcc7942_2296	0.27	+0.5
2,366,431	-	glnA	Synpcc7942_2296	0.28	-0.6
2,366,445	+	glnA	Synpcc7942_2296	0.29	-2.1
2,366,452	+	glnA	Synpcc7942_2296	0.29	+1.9
2,366,452	+	glnA	Synpcc7942_2296	0.29	+1.7
2,366,452	+	glnA	Synpcc7942_2296	0.29	+0.7
2,366,452	+	glnA	Synpcc7942_2296	0.29	+0.1
2,366,452	+	glnA	Synpcc7942_2296	0.29	+1.6
2,366,452	+	glnA	Synpcc7942_2296	0.29	+1.0
2,366,452	+	glnA	Synpcc7942_2296	0.29	+0.5
2,366,452	+	glnA	Synpcc7942_2296	0.29	+0.2
2,366,452	+	glnA	Synpcc7942_2296	0.29	+0.1
2,366,452	+	glnA	Synpcc7942_2296	0.29	-1.6
2,366,452	+	glnA	Synpcc7942_2296	0.29	+2.5
2,366,452	+	glnA	Synpcc7942_2296	0.29	-0.9
2,366,452	+	glnA	Synpcc7942_2296	0.29	+1.6
2,366,460	-	glnA	Synpcc7942_2296	0.30	-0.5
2,366,460	-	glnA	Synpcc7942_2296	0.30	-2.1
2,366,460	-	glnA	Synpcc7942_2296	0.30	-1.1
2,366,460	-	glnA	Synpcc7942_2296	0.30	+1.7
2,366,460	-	glnA	Synpcc7942_2296	0.30	-1.8
2,366,509	+	glnA	Synpcc7942_2296	0.33	-2.3
2,366,509	+	glnA	Synpcc7942_2296	0.33	-2.0
2,366,534	+	glnA	Synpcc7942_2296	0.35	-0.2
2,366,546	+	glnA	Synpcc7942_2296	0.36	-0.0
2,366,574	-	glnA	Synpcc7942_2296	0.38	-1.5
2,366,588	+	glnA	Synpcc7942_2296	0.40	-1.8
2,366,588	+	glnA	Synpcc7942_2296	0.40	+3.9
2,366,588	+				-0.5
2,366,596	-	glnA	Synpcc7942_2296	0.40	-0.7
2,366,601	-	glnA	Synpcc7942_2296	0.41	-0.3
2,366,644	-	glnA	Synpcc7942_2296	0.44	+0.5
2,366,710	-	glnA	Synpcc7942_2296	0.49	-0.2
2,366,710	-	glnA	Synpcc7942_2296	0.49	+0.5
2,366,722	+	glnA	Synpcc7942_2296	0.50	-0.5
2,366,723	+	glnA	Synpcc7942_2296	0.50	-1.0
2,366,730	-	glnA	Synpcc7942_2296	0.50	+0.4
2,366,730	-	glnA	Synpcc7942_2296	0.50	-2.1
2,366,731	-	glnA	Synpcc7942_2296	0.50	-0.5
2,366,731	-	glnA	Synpcc7942_2296	0.50	-1.1
2,366,737	-	glnA	Synpcc7942_2296	0.51	-1.8
2,366,755	-	glnA	Synpcc7942_2296	0.52	-1.1
2,366,756	-	glnA	Synpcc7942_2296	0.52	-1.1
2,366,792	-	glnA	Synpcc7942_2296	0.55	+0.5
2,366,802	+	glnA	Synpcc7942_2296	0.56	-0.1
2,366,807	+				-1.1
2,366,815	-	glnA	Synpcc7942_2296	0.57	+0.9
2,366,815	-	glnA	Synpcc7942_2296	0.57	+0.4
2,366,817	+	glnA	Synpcc7942_2296	0.57	-0.5
2,366,858	-	glnA	Synpcc7942_2296	0.60	-0.9
2,366,858	-	glnA	Synpcc7942_2296	0.60	-0.3
2,366,860	+	glnA	Synpcc7942_2296	0.60	+0.5
2,366,862	+	glnA	Synpcc7942_2296	0.61	-0.8
2,366,881	+	glnA	Synpcc7942_2296	0.62	+1.5
2,366,886	+	glnA	Synpcc7942_2296	0.62	+2.8
2,366,891	+	glnA	Synpcc7942_2296	0.63	-0.5
2,366,894	-	glnA	Synpcc7942_2296	0.63	+1.8
2,366,894	-				-0.5
2,366,905	+	glnA	Synpcc7942_2296	0.64	-1.3
2,366,925	-	glnA	Synpcc7942_2296	0.65	-0.1
2,366,935	-	glnA	Synpcc7942_2296	0.66	-0.0
2,366,935	-	glnA	Synpcc7942_2296	0.66	-0.6
2,366,935	-	glnA	Synpcc7942_2296	0.66	+0.1
2,366,965	+	glnA	Synpcc7942_2296	0.68	+5.1
2,366,985	-	glnA	Synpcc7942_2296	0.70	+0.0
2,367,016	+	glnA	Synpcc7942_2296	0.72	+1.9
2,367,021	+	glnA	Synpcc7942_2296	0.73	+0.1
2,367,021	+	glnA	Synpcc7942_2296	0.73	+1.3
2,367,021	+	glnA	Synpcc7942_2296	0.73	-1.5
2,367,021	+	glnA	Synpcc7942_2296	0.73	+0.5
2,367,024	-	glnA	Synpcc7942_2296	0.73	+0.1
2,367,024	-	glnA	Synpcc7942_2296	0.73	-1.8
2,367,029	-	glnA	Synpcc7942_2296	0.73	+1.5
2,367,029	-	glnA	Synpcc7942_2296	0.73	+0.5
2,367,029	-	glnA	Synpcc7942_2296	0.73	-1.4
2,367,029	-	glnA	Synpcc7942_2296	0.73	+1.5
2,367,050	-				-0.5
2,367,067	+	glnA	Synpcc7942_2296	0.76	+1.0
2,367,067	+	glnA	Synpcc7942_2296	0.76	-0.8
2,367,073	-	glnA	Synpcc7942_2296	0.77	+0.9
2,367,073	-	glnA	Synpcc7942_2296	0.77	-0.5