Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2074

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
2,151,712	-	dnaK1	Synpcc7942_2073	0.60	-0.4
2,151,781	-	dnaK1	Synpcc7942_2073	0.64	+2.2
2,151,781	-	dnaK1	Synpcc7942_2073	0.64	+1.7
2,151,798	+	dnaK1	Synpcc7942_2073	0.64	+0.5
2,151,809	-	dnaK1	Synpcc7942_2073	0.65	+0.8
2,152,007	+	dnaK1	Synpcc7942_2073	0.75	+2.1
2,152,017	+	dnaK1	Synpcc7942_2073	0.76	+1.5
2,152,029	+	dnaK1	Synpcc7942_2073	0.76	+2.1
2,152,050	-	dnaK1	Synpcc7942_2073	0.77	-1.5
2,152,050	-	dnaK1	Synpcc7942_2073	0.77	+0.5
2,152,087	-	dnaK1	Synpcc7942_2073	0.79	+0.3
2,152,202	-	dnaK1	Synpcc7942_2073	0.85	+2.9
2,152,202	-	dnaK1	Synpcc7942_2073	0.85	-0.1
2,152,323	-				+3.4
2,152,323	-				-0.5
2,152,329	-				-1.1
2,152,366	-				-1.8
2,152,383	+				+1.9
2,152,389	-				+0.5
2,152,396	-				-1.5
2,152,413	+				+0.8
2,152,487	-				+0.5
2,152,492	+				+0.8
2,152,495	-				-0.3
2,152,506	+				-2.3
2,152,540	+				-2.1
2,152,542	+				+0.5
2,152,548	-				+1.5
2,152,550	-				-1.1
2,152,566	+				-1.6
2,152,566	+				+1.1
2,152,574	-				-0.7
2,152,579	-				-0.7
2,152,585	+				-2.1
2,152,625	+				-0.8
2,152,625	+				-0.0
2,152,633	-				+2.3
2,152,635	+				+0.5
2,152,635	+				-0.3
2,152,638	-				-2.1
2,152,643	-				+0.5
2,153,149	-	dnaJ1	Synpcc7942_2074	0.45	+0.5
2,153,449	-	dnaJ1	Synpcc7942_2074	0.72	-1.1
2,153,451	+	dnaJ1	Synpcc7942_2074	0.72	-2.0
2,153,484	-	dnaJ1	Synpcc7942_2074	0.75	-1.8
2,153,522	+	dnaJ1	Synpcc7942_2074	0.78	-2.3
2,153,580	+	dnaJ1	Synpcc7942_2074	0.83	+0.5
2,153,580	+	dnaJ1	Synpcc7942_2074	0.83	-1.7
2,153,580	+	dnaJ1	Synpcc7942_2074	0.83	-1.8
2,153,729	-				+0.5
2,154,008	-				+1.5
2,154,031	-				+1.0
2,154,058	+				-3.8
2,154,058	+				-3.1
2,154,058	+				-1.1
2,154,066	-				-4.6
2,154,079	-				-3.0
2,154,150	+	rsgA	Synpcc7942_2076	0.13	-2.7
2,154,151	-	rsgA	Synpcc7942_2076	0.13	-3.1
2,154,192	+	rsgA	Synpcc7942_2076	0.17	-3.1
2,154,250	-	rsgA	Synpcc7942_2076	0.22	-5.0
2,154,315	+	rsgA	Synpcc7942_2076	0.29	-3.1
2,154,354	+	rsgA	Synpcc7942_2076	0.32	-2.7
2,154,360	+	rsgA	Synpcc7942_2076	0.33	-2.3
2,154,360	+	rsgA	Synpcc7942_2076	0.33	-3.8
2,154,360	+	rsgA	Synpcc7942_2076	0.33	-3.7
2,154,360	+	rsgA	Synpcc7942_2076	0.33	-5.6
2,154,365	+	rsgA	Synpcc7942_2076	0.33	-4.1
2,154,365	+	rsgA	Synpcc7942_2076	0.33	-2.3
2,154,368	-	rsgA	Synpcc7942_2076	0.34	-4.3
2,154,455	-	rsgA	Synpcc7942_2076	0.42	-3.1
2,154,464	+	rsgA	Synpcc7942_2076	0.43	-4.0
2,154,472	-	rsgA	Synpcc7942_2076	0.43	-3.0
2,154,582	+	rsgA	Synpcc7942_2076	0.54	-3.9
2,154,604	+	rsgA	Synpcc7942_2076	0.56	-2.7
2,154,615	+	rsgA	Synpcc7942_2076	0.57	-4.0
2,154,616	+	rsgA	Synpcc7942_2076	0.57	-4.5
2,154,664	+	rsgA	Synpcc7942_2076	0.62	-1.5
2,154,673	-	rsgA	Synpcc7942_2076	0.63	-1.8
2,154,715	+	rsgA	Synpcc7942_2076	0.67	-4.7
2,154,718	-	rsgA	Synpcc7942_2076	0.67	-3.4
2,154,723	-	rsgA	Synpcc7942_2076	0.67	-3.0