Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1923

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
1,998,264	-		Synpcc7942_1921	0.13	+0.4
1,998,273	+		Synpcc7942_1921	0.15	+2.0
1,998,281	-		Synpcc7942_1921	0.17	+0.9
1,998,288	+		Synpcc7942_1921	0.19	-1.1
1,998,296	-		Synpcc7942_1921	0.21	+1.1
1,998,334	-		Synpcc7942_1921	0.29	+0.8
1,998,337	+		Synpcc7942_1921	0.30	+0.5
1,998,337	+		Synpcc7942_1921	0.30	-1.3
1,998,337	+		Synpcc7942_1921	0.30	+0.5
1,998,337	+		Synpcc7942_1921	0.30	+0.7
1,998,337	+		Synpcc7942_1921	0.30	+0.6
1,998,337	+		Synpcc7942_1921	0.30	+1.2
1,998,345	-		Synpcc7942_1921	0.31	+0.4
1,998,345	-		Synpcc7942_1921	0.31	+0.4
1,998,360	+		Synpcc7942_1921	0.35	+0.4
1,998,360	+		Synpcc7942_1921	0.35	-0.1
1,998,372	+		Synpcc7942_1921	0.37	-2.1
1,998,378	-		Synpcc7942_1921	0.39	-0.1
1,998,382	+		Synpcc7942_1921	0.40	-1.1
1,998,409	-		Synpcc7942_1921	0.45	+2.0
1,998,417	+		Synpcc7942_1921	0.47	-1.6
1,998,425	+		Synpcc7942_1921	0.49	-2.4
1,998,425	+		Synpcc7942_1921	0.49	+2.1
1,998,498	+		Synpcc7942_1921	0.65	+3.3
1,998,498	+		Synpcc7942_1921	0.65	-0.9
1,998,506	-				+0.4
1,998,509	+		Synpcc7942_1921	0.68	+0.0
1,998,547	+		Synpcc7942_1921	0.76	-1.1
1,998,586	-		Synpcc7942_1921	0.85	+0.4
1,998,586	-		Synpcc7942_1921	0.85	+1.8
1,998,613	-				+0.9
1,998,692	+				+4.0
1,998,989	-		Synpcc7942_1922	0.66	+3.6
1,999,208	-				-3.6
1,999,248	+				-1.2
1,999,334	-	sigG	Synpcc7942_1923	0.14	-3.6
1,999,377	+	sigG	Synpcc7942_1923	0.21	-2.1
1,999,397	+	sigG	Synpcc7942_1923	0.24	-1.9
1,999,474	-	sigG	Synpcc7942_1923	0.36	+0.4
1,999,474	-	sigG	Synpcc7942_1923	0.36	-0.6
1,999,501	-	sigG	Synpcc7942_1923	0.40	-0.6
1,999,523	+	sigG	Synpcc7942_1923	0.43	-2.4
1,999,619	-	sigG	Synpcc7942_1923	0.58	-2.4
1,999,660	+	sigG	Synpcc7942_1923	0.64	-3.4
1,999,700	-	sigG	Synpcc7942_1923	0.70	-2.9
1,999,745	+	sigG	Synpcc7942_1923	0.77	-4.5
1,999,758	-	sigG	Synpcc7942_1923	0.79	-2.6
1,999,785	+	sigG	Synpcc7942_1923	0.83	-2.7
1,999,805	+	sigG	Synpcc7942_1923	0.86	+0.4
1,999,814	+	sigG	Synpcc7942_1923	0.87	-2.1
1,999,850	+				-2.9
1,999,892	+				-1.9
1,999,902	-				-0.6
1,999,931	+				-2.7
1,999,939	-				+0.7
1,999,939	-				-2.9
1,999,954	+				-2.7
1,999,954	+				-2.9
1,999,954	+				-0.1
1,999,954	+				-3.5
1,999,954	+				-0.7
1,999,984	+				-2.6
1,999,986	+				-1.1
1,999,992	-				-1.9
1,999,998	+				-2.3
2,000,008	+				+1.0
2,000,008	+				+0.7
2,000,016	-				+1.4
2,000,063	+				-3.7
2,000,073	+				+0.4
2,000,073	+				+0.3
2,000,081	-				-1.2
2,000,113	+				+1.1
2,000,113	+				+1.3
2,000,121	-				-0.3
2,000,121	-				+0.4
2,000,128	+				-1.9
2,000,128	+				-0.4
2,000,135	+				+1.6
2,000,136	-				+1.8
2,000,156	+				+2.1
2,000,156	+				+1.2
2,000,156	+				+1.0
2,000,158	+				+0.3
2,000,168	+				+1.8
2,000,211	-				+2.4
2,000,232	-				+0.8
2,000,252	-				+0.1
2,000,271	+		Synpcc7942_1924	0.12	+0.3
2,000,276	+		Synpcc7942_1924	0.13	+1.4
2,000,277	-		Synpcc7942_1924	0.14	+0.1
2,000,284	-		Synpcc7942_1924	0.15	-0.6
2,000,284	-		Synpcc7942_1924	0.15	-0.6
2,000,312	+		Synpcc7942_1924	0.20	+1.0
2,000,326	+		Synpcc7942_1924	0.23	-1.2
2,000,351	-		Synpcc7942_1924	0.28	+0.4
2,000,353	+		Synpcc7942_1924	0.28	+0.8
2,000,358	-		Synpcc7942_1924	0.29	+0.5
2,000,383	+				+0.4
2,000,383	+		Synpcc7942_1924	0.34	+1.9
2,000,391	-		Synpcc7942_1924	0.35	+1.0
2,000,391	-		Synpcc7942_1924	0.35	-1.2
2,000,391	-		Synpcc7942_1924	0.35	-0.6
2,000,407	+		Synpcc7942_1924	0.38	+0.7
2,000,407	+		Synpcc7942_1924	0.38	-0.7
2,000,415	-		Synpcc7942_1924	0.40	+1.4
2,000,456	+		Synpcc7942_1924	0.48	+0.4
2,000,456	+		Synpcc7942_1924	0.48	-0.2
2,000,464	-		Synpcc7942_1924	0.49	+0.0
2,000,464	-		Synpcc7942_1924	0.49	+2.4
2,000,464	-		Synpcc7942_1924	0.49	-0.3
2,000,464	-		Synpcc7942_1924	0.49	-1.9
2,000,464	-		Synpcc7942_1924	0.49	+0.8
2,000,464	-		Synpcc7942_1924	0.49	-1.3
2,000,480	+		Synpcc7942_1924	0.52	+1.8
2,000,480	+		Synpcc7942_1924	0.52	-1.2
2,000,480	+		Synpcc7942_1924	0.52	+1.8
2,000,488	-		Synpcc7942_1924	0.54	-1.2
2,000,488	-				+2.2
2,000,488	-		Synpcc7942_1924	0.54	-1.3
2,000,488	-		Synpcc7942_1924	0.54	+0.8
2,000,493	+		Synpcc7942_1924	0.55	+0.2
2,000,501	-		Synpcc7942_1924	0.56	+1.2
2,000,501	-		Synpcc7942_1924	0.56	+1.4
2,000,502	-		Synpcc7942_1924	0.56	+1.0
2,000,541	-		Synpcc7942_1924	0.64	+0.2
2,000,565	+		Synpcc7942_1924	0.68	-3.0
2,000,572	+		Synpcc7942_1924	0.70	+1.1
2,000,575	-		Synpcc7942_1924	0.70	-2.0
2,000,584	+		Synpcc7942_1924	0.72	-1.2
2,000,584	+		Synpcc7942_1924	0.72	-1.2
2,000,585	-		Synpcc7942_1924	0.72	-1.4
2,000,592	-		Synpcc7942_1924	0.73	+2.6
2,000,613	+		Synpcc7942_1924	0.77	+0.8
2,000,618	+		Synpcc7942_1924	0.78	-0.6
2,000,618	-		Synpcc7942_1924	0.78	-0.7
2,000,648	-		Synpcc7942_1924	0.84	+0.7
2,000,669	-		Synpcc7942_1924	0.88	-1.4
2,000,712	+				-0.1
2,000,712	+				-1.0
2,000,714	+				-2.4
2,000,714	+				+1.4
2,000,714	+				+1.0
2,000,714	+				-0.2
2,000,714	+				+0.2
2,000,714	+				-2.1
2,000,714	+				+1.1
2,000,714	+				+1.6
2,000,714	+				-2.6
2,000,714	+				+0.4
2,000,714	+				-0.2
2,000,714	+				-1.5
2,000,714	+				-0.2
2,000,714	+				-1.9
2,000,714	+				-1.1
2,000,714	+				-0.1
2,000,714	+				-0.6
2,000,717	-				-0.8
2,000,717	-				-0.6
2,000,722	-				+1.4
2,000,722	-				-0.0
2,000,722	-				-1.2
2,000,722	-				+1.3
2,000,722	-				-0.9
2,000,722	-				-0.9
2,000,722	-				+0.7
2,000,722	-				+2.0
2,000,722	-				-1.2
2,000,722	-				-0.6
2,000,722	-				-0.6
2,000,722	-				-0.6
2,000,743	-				+0.6
2,000,743	-				+2.6
2,000,743	-				+2.0
2,000,747	+				-0.2
2,000,753	-				+1.5
2,000,766	-				+0.0
2,000,782	+				-1.2
2,000,782	+				+0.4
2,000,782	+				+1.3
2,000,782	+				-0.3
2,000,782	+				+1.2
2,000,790	-				+0.4
2,000,793	+				+0.6
2,000,803	+				+1.4
2,000,806	-				-0.6
2,000,806	-				-1.7
2,000,812	-				-0.2
2,000,848	-		Synpcc7942_1925	0.14	+0.5
2,000,850	+		Synpcc7942_1925	0.14	+1.2
2,000,855	+		Synpcc7942_1925	0.14	+1.8
2,000,860	+		Synpcc7942_1925	0.15	-1.2
2,000,881	+		Synpcc7942_1925	0.17	+1.9
2,000,895	+		Synpcc7942_1925	0.19	-0.6