Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1799

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
1,868,025	+		Synpcc7942_1798	0.26	+1.4
1,868,040	-		Synpcc7942_1798	0.28	-0.6
1,868,136	+		Synpcc7942_1798	0.43	+2.4
1,868,157	+		Synpcc7942_1798	0.47	+0.4
1,868,265	+		Synpcc7942_1798	0.64	+1.3
1,868,286	+		Synpcc7942_1798	0.67	-1.2
1,868,318	-		Synpcc7942_1798	0.72	+0.4
1,868,375	-		Synpcc7942_1798	0.81	-2.9
1,868,426	+				-1.6
1,868,426	+		Synpcc7942_1798	0.90	+0.4
1,868,451	+				-1.4
1,868,492	-				-0.4
1,868,521	+				+0.7
1,868,752	-				-0.8
1,868,782	+				-2.4
1,868,789	-				-0.8
1,868,790	-				+0.4
1,868,792	+				+1.1
1,868,823	-				-1.1
1,868,836	+				+0.4
1,868,845	-				+0.7
1,868,876	-				+1.6
1,868,886	+				+0.7
1,868,886	+				-0.4
1,868,894	+				-0.4
1,868,894	-				-1.3
1,868,896	+				+1.3
1,868,896	+				-1.9
1,868,904	-				+0.4
1,868,904	-				-1.0
1,868,904	-				+0.5
1,868,941	-				+2.7
1,868,943	+				+0.4
1,868,943	+				+2.4
1,868,943	+				+0.3
1,868,943	+				-0.8
1,868,943	+				-0.9
1,868,951	-				-0.2
1,868,951	-				+0.4
1,868,951	-				+0.1
1,868,961	+				+0.4
1,868,961	+				+1.4
1,868,961	-				-2.4
1,868,966	+				-1.2
1,868,999	-				-2.2
1,868,999	-				+1.1
1,868,999	-				-2.1
1,869,137	+	hypE	Synpcc7942_1799	0.19	-1.5
1,869,162	+	hypE	Synpcc7942_1799	0.22	+0.4
1,869,165	+	hypE	Synpcc7942_1799	0.22	-3.2
1,869,193	-	hypE	Synpcc7942_1799	0.25	-1.4
1,869,195	+	hypE	Synpcc7942_1799	0.25	-0.3
1,869,195	+	hypE	Synpcc7942_1799	0.25	-0.6
1,869,203	-	hypE	Synpcc7942_1799	0.25	+1.4
1,869,294	-	hypE	Synpcc7942_1799	0.34	+1.2
1,869,302	+	hypE	Synpcc7942_1799	0.35	+1.1
1,869,302	+	hypE	Synpcc7942_1799	0.35	+1.1
1,869,310	-	hypE	Synpcc7942_1799	0.36	-1.6
1,869,312	+	hypE	Synpcc7942_1799	0.36	-0.6
1,869,312	+	hypE	Synpcc7942_1799	0.36	-0.3
1,869,312	+	hypE	Synpcc7942_1799	0.36	-0.6
1,869,312	+	hypE	Synpcc7942_1799	0.36	-1.2
1,869,320	-	hypE	Synpcc7942_1799	0.37	-0.6
1,869,320	-	hypE	Synpcc7942_1799	0.37	-1.2
1,869,320	-	hypE	Synpcc7942_1799	0.37	-0.3
1,869,320	-	hypE	Synpcc7942_1799	0.37	+1.0
1,869,320	-	hypE	Synpcc7942_1799	0.37	+0.4
1,869,340	-	hypE	Synpcc7942_1799	0.39	+1.0
1,869,362	-	hypE	Synpcc7942_1799	0.41	-0.6
1,869,462	+	hypE	Synpcc7942_1799	0.51	+0.6
1,869,462	+	hypE	Synpcc7942_1799	0.51	+1.4
1,869,470	-	hypE	Synpcc7942_1799	0.51	+0.3
1,869,470	-	hypE	Synpcc7942_1799	0.51	-0.2
1,869,488	+	hypE	Synpcc7942_1799	0.53	-2.9
1,869,501	+	hypE	Synpcc7942_1799	0.54	+1.6
1,869,509	-	hypE	Synpcc7942_1799	0.55	+0.4
1,869,519	+	hypE	Synpcc7942_1799	0.56	-0.2
1,869,525	+	hypE	Synpcc7942_1799	0.57	-3.4
1,869,525	+	hypE	Synpcc7942_1799	0.57	+1.4
1,869,527	-	hypE	Synpcc7942_1799	0.57	-2.8
1,869,534	-	hypE	Synpcc7942_1799	0.58	+0.7
1,869,534	-	hypE	Synpcc7942_1799	0.58	-0.1
1,869,534	-	hypE	Synpcc7942_1799	0.58	+2.6
1,869,545	-	hypE	Synpcc7942_1799	0.59	-0.6
1,869,576	-	hypE	Synpcc7942_1799	0.62	-0.8
1,869,633	+	hypE	Synpcc7942_1799	0.67	-1.2
1,869,641	-	hypE	Synpcc7942_1799	0.68	+0.2
1,869,678	-	hypE	Synpcc7942_1799	0.72	-1.3
1,869,696	-	hypE	Synpcc7942_1799	0.73	-1.5
1,869,702	-	hypE	Synpcc7942_1799	0.74	+0.8
1,869,750	-	hypE	Synpcc7942_1799	0.78	-0.4
1,869,751	+	hypE	Synpcc7942_1799	0.79	-1.6
1,869,751	+	hypE	Synpcc7942_1799	0.79	+0.4
1,869,751	+	hypE	Synpcc7942_1799	0.79	-2.3
1,869,759	-	hypE	Synpcc7942_1799	0.79	-1.2
1,869,872	-				-0.2
1,869,890	-				-1.8
1,869,896	-				-1.6
1,869,911	-				+1.0
1,869,921	+				+1.5
1,869,946	-				+0.4
1,869,959	-				-0.2
1,870,003	+		Synpcc7942_1800	0.12	-1.5
1,870,007	+		Synpcc7942_1800	0.12	-0.3
1,870,011	-		Synpcc7942_1800	0.13	+0.4
1,870,026	-		Synpcc7942_1800	0.16	-1.3
1,870,052	-		Synpcc7942_1800	0.21	-1.8
1,870,052	-		Synpcc7942_1800	0.21	-1.2
1,870,117	-		Synpcc7942_1800	0.34	+4.8
1,870,144	+		Synpcc7942_1800	0.39	-0.1
1,870,150	-		Synpcc7942_1800	0.40	-1.8
1,870,150	-		Synpcc7942_1800	0.40	+2.1
1,870,150	-		Synpcc7942_1800	0.40	-0.6
1,870,155	-		Synpcc7942_1800	0.41	-0.8
1,870,159	+		Synpcc7942_1800	0.42	+1.1
1,870,215	+		Synpcc7942_1800	0.53	+0.4
1,870,223	-		Synpcc7942_1800	0.55	-1.1
1,870,223	-		Synpcc7942_1800	0.55	-3.1
1,870,259	+		Synpcc7942_1800	0.62	-3.2
1,870,291	+		Synpcc7942_1800	0.68	+1.2
1,870,299	-		Synpcc7942_1800	0.69	-3.2
1,870,319	+		Synpcc7942_1800	0.73	+1.6
1,870,343	+		Synpcc7942_1800	0.78	+0.1
1,870,343	+		Synpcc7942_1800	0.78	+1.1
1,870,343	+		Synpcc7942_1800	0.78	-0.2
1,870,343	+				+2.0
1,870,343	+		Synpcc7942_1800	0.78	-1.9
1,870,345	+		Synpcc7942_1800	0.78	+0.7
1,870,351	-		Synpcc7942_1800	0.80	-0.8
1,870,351	-		Synpcc7942_1800	0.80	+0.3
1,870,351	-		Synpcc7942_1800	0.80	+2.8
1,870,351	-		Synpcc7942_1800	0.80	+0.7
1,870,351	-		Synpcc7942_1800	0.80	-0.6
1,870,360	+		Synpcc7942_1800	0.81	+3.4
1,870,367	+		Synpcc7942_1800	0.83	+1.4
1,870,368	-		Synpcc7942_1800	0.83	+0.2
1,870,368	-		Synpcc7942_1800	0.83	+0.4
1,870,368	-		Synpcc7942_1800	0.83	-2.7
1,870,368	-		Synpcc7942_1800	0.83	+2.0
1,870,375	-		Synpcc7942_1800	0.84	-0.6
1,870,375	-		Synpcc7942_1800	0.84	-3.2
1,870,375	-		Synpcc7942_1800	0.84	-0.1
1,870,375	-		Synpcc7942_1800	0.84	+2.2
1,870,375	-		Synpcc7942_1800	0.84	-2.4
1,870,375	-		Synpcc7942_1800	0.84	+0.8
1,870,385	+		Synpcc7942_1800	0.86	-2.2
1,870,408	-				-1.9
1,870,410	+				+0.2
1,870,424	-				+1.3
1,870,441	-				+2.1
1,870,449	+				+1.3
1,870,449	+				+0.4
1,870,450	+				-1.4
1,870,457	-				+0.9
1,870,458	-				-1.6
1,870,458	-				+0.4
1,870,458	-				+1.0
1,870,458	-				-1.6
1,870,458	-				+0.4
1,870,477	+				+1.3
1,870,487	-				+0.9
1,870,487	-				-0.8
1,870,489	+				-1.6
1,870,489	+				-1.2
1,870,497	-				+1.4
1,870,497	-				+1.0
1,870,504	-				+0.6
1,870,507	+				+0.6
1,870,554	-				+0.6
1,870,595	+				+0.5
1,870,603	-				+0.4
1,870,615	+				+0.2
1,870,699	+				+0.6
1,870,699	+				-1.6
1,870,699	+				-2.1
1,870,707	-				+3.6
1,870,722	+				-0.3
1,870,730	-				-1.2
1,870,731	-				+0.4
1,870,738	-				+1.1
1,870,750	-				+1.3
1,870,778	-		Synpcc7942_1801	0.12	-0.3
1,870,779	+		Synpcc7942_1801	0.12	-2.4
1,870,779	+		Synpcc7942_1801	0.12	-0.0
1,870,787	-		Synpcc7942_1801	0.13	-1.9
1,870,789	+		Synpcc7942_1801	0.14	+0.9
1,870,789	+		Synpcc7942_1801	0.14	+2.4
1,870,789	+		Synpcc7942_1801	0.14	-1.0
1,870,789	+		Synpcc7942_1801	0.14	+0.7
1,870,793	+		Synpcc7942_1801	0.14	+0.4
1,870,794	+		Synpcc7942_1801	0.14	-0.6
1,870,794	+		Synpcc7942_1801	0.14	+2.1
1,870,797	-		Synpcc7942_1801	0.15	-0.1
1,870,797	-		Synpcc7942_1801	0.15	+1.0
1,870,797	-		Synpcc7942_1801	0.15	+0.4
1,870,797	-		Synpcc7942_1801	0.15	-0.4
1,870,797	-		Synpcc7942_1801	0.15	+0.8
1,870,797	-		Synpcc7942_1801	0.15	-2.8
1,870,798	+		Synpcc7942_1801	0.15	+0.1
1,870,798	+		Synpcc7942_1801	0.15	+0.4
1,870,816	+		Synpcc7942_1801	0.17	-0.7
1,870,823	+		Synpcc7942_1801	0.18	-0.3
1,870,823	+		Synpcc7942_1801	0.18	+1.8
1,870,823	+		Synpcc7942_1801	0.18	+1.2
1,870,823	+		Synpcc7942_1801	0.18	+1.0
1,870,831	-		Synpcc7942_1801	0.19	+0.4
1,870,831	-		Synpcc7942_1801	0.19	-1.6
1,870,831	-		Synpcc7942_1801	0.19	-1.9
1,870,833	-		Synpcc7942_1801	0.20	+0.4
1,870,836	-		Synpcc7942_1801	0.20	+2.0
1,870,852	+		Synpcc7942_1801	0.22	-1.6
1,870,860	-		Synpcc7942_1801	0.23	+0.9
1,870,880	+		Synpcc7942_1801	0.26	+0.6
1,870,880	+		Synpcc7942_1801	0.26	-0.6
1,870,880	+		Synpcc7942_1801	0.26	-0.9
1,870,916	-		Synpcc7942_1801	0.31	-1.9
1,870,919	+		Synpcc7942_1801	0.32	+2.2
1,870,944	+		Synpcc7942_1801	0.35	+1.0
1,870,949	+		Synpcc7942_1801	0.36	-0.2
1,870,952	-		Synpcc7942_1801	0.36	+0.7
1,870,957	-		Synpcc7942_1801	0.37	+3.5
1,870,965	+		Synpcc7942_1801	0.38	+0.7