Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1798

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
1,866,869	+				+0.9
1,866,869	+				-0.2
1,866,870	+				-0.6
1,866,877	-				-0.6
1,866,877	-				-1.2
1,866,877	-				+0.2
1,866,879	+				-3.2
1,866,879	+				+2.0
1,866,879	+				-0.5
1,866,879	+				+1.1
1,866,880	+				+1.1
1,866,880	+				+0.4
1,866,887	-				+1.4
1,866,887	-				-1.2
1,866,887	-				+2.5
1,866,887	-				+0.6
1,866,925	+		Synpcc7942_1797	0.10	-2.1
1,866,943	+		Synpcc7942_1797	0.14	-0.6
1,867,006	+		Synpcc7942_1797	0.26	-0.2
1,867,006	+		Synpcc7942_1797	0.26	+0.1
1,867,060	-		Synpcc7942_1797	0.37	-0.6
1,867,078	-		Synpcc7942_1797	0.41	+1.1
1,867,093	+				-1.2
1,867,101	-		Synpcc7942_1797	0.45	+0.1
1,867,101	-		Synpcc7942_1797	0.45	-0.1
1,867,105	+		Synpcc7942_1797	0.46	-1.2
1,867,105	+		Synpcc7942_1797	0.46	-1.6
1,867,105	+		Synpcc7942_1797	0.46	-1.2
1,867,113	-		Synpcc7942_1797	0.48	+1.0
1,867,154	+		Synpcc7942_1797	0.56	+0.4
1,867,154	+		Synpcc7942_1797	0.56	-0.9
1,867,162	-		Synpcc7942_1797	0.57	+1.8
1,867,162	-		Synpcc7942_1797	0.57	-1.2
1,867,162	-		Synpcc7942_1797	0.57	-0.6
1,867,164	+		Synpcc7942_1797	0.58	-1.6
1,867,172	-		Synpcc7942_1797	0.59	+1.4
1,867,172	-		Synpcc7942_1797	0.59	-1.2
1,867,181	+		Synpcc7942_1797	0.61	+0.4
1,867,194	+		Synpcc7942_1797	0.64	-1.3
1,867,196	+		Synpcc7942_1797	0.64	-0.3
1,867,229	+		Synpcc7942_1797	0.71	+0.4
1,867,229	+		Synpcc7942_1797	0.71	+0.1
1,867,237	+		Synpcc7942_1797	0.72	-0.4
1,867,237	+		Synpcc7942_1797	0.72	-1.1
1,867,239	+		Synpcc7942_1797	0.73	-2.4
1,867,247	+		Synpcc7942_1797	0.74	-0.0
1,867,263	+		Synpcc7942_1797	0.77	-0.3
1,867,271	-		Synpcc7942_1797	0.79	+0.1
1,867,271	-		Synpcc7942_1797	0.79	+0.4
1,867,271	-		Synpcc7942_1797	0.79	-2.3
1,867,271	-		Synpcc7942_1797	0.79	-0.9
1,867,278	-		Synpcc7942_1797	0.80	+0.1
1,867,296	+		Synpcc7942_1797	0.84	+0.4
1,867,298	-		Synpcc7942_1797	0.84	-2.9
1,867,311	+		Synpcc7942_1797	0.87	-0.6
1,867,312	+		Synpcc7942_1797	0.87	+1.2
1,867,321	-		Synpcc7942_1797	0.89	-0.6
1,867,331	-				+1.7
1,867,337	+				-0.4
1,867,347	+				-0.0
1,867,347	+				-0.2
1,867,347	+				-0.2
1,867,355	-				-0.4
1,867,365	+				+1.7
1,867,373	-				-1.6
1,867,408	+				+2.4
1,867,418	+				-1.6
1,867,426	-				+2.7
1,867,468	+				-0.6
1,867,843	+				+1.2
1,867,871	+				+1.5
1,867,879	-				-0.6
1,867,879	-				-0.6
1,867,879	-				+1.9
1,867,879	-				-1.0
1,867,881	+				-1.6
1,868,025	+		Synpcc7942_1798	0.26	+1.4
1,868,040	-		Synpcc7942_1798	0.28	-0.6
1,868,136	+		Synpcc7942_1798	0.43	+2.4
1,868,157	+		Synpcc7942_1798	0.47	+0.4
1,868,265	+		Synpcc7942_1798	0.64	+1.3
1,868,286	+		Synpcc7942_1798	0.67	-1.2
1,868,318	-		Synpcc7942_1798	0.72	+0.4
1,868,375	-		Synpcc7942_1798	0.81	-2.9
1,868,426	+				-1.6
1,868,426	+		Synpcc7942_1798	0.90	+0.4
1,868,451	+				-1.4
1,868,492	-				-0.4
1,868,521	+				+0.7
1,868,752	-				-0.8
1,868,782	+				-2.4
1,868,789	-				-0.8
1,868,790	-				+0.4
1,868,792	+				+1.1
1,868,823	-				-1.1
1,868,836	+				+0.4
1,868,845	-				+0.7
1,868,876	-				+1.6
1,868,886	+				+0.7
1,868,886	+				-0.4
1,868,894	+				-0.4
1,868,894	-				-1.3
1,868,896	+				+1.3
1,868,896	+				-1.9
1,868,904	-				+0.4
1,868,904	-				-1.0
1,868,904	-				+0.5
1,868,941	-				+2.7
1,868,943	+				+0.4
1,868,943	+				+2.4
1,868,943	+				+0.3
1,868,943	+				-0.8
1,868,943	+				-0.9
1,868,951	-				-0.2
1,868,951	-				+0.4
1,868,951	-				+0.1
1,868,961	+				+0.4
1,868,961	+				+1.4
1,868,961	-				-2.4
1,868,966	+				-1.2
1,868,999	-				-2.2
1,868,999	-				+1.1
1,868,999	-				-2.1
1,869,137	+	hypE	Synpcc7942_1799	0.19	-1.5
1,869,162	+	hypE	Synpcc7942_1799	0.22	+0.4
1,869,165	+	hypE	Synpcc7942_1799	0.22	-3.2
1,869,193	-	hypE	Synpcc7942_1799	0.25	-1.4
1,869,195	+	hypE	Synpcc7942_1799	0.25	-0.3
1,869,195	+	hypE	Synpcc7942_1799	0.25	-0.6
1,869,203	-	hypE	Synpcc7942_1799	0.25	+1.4
1,869,294	-	hypE	Synpcc7942_1799	0.34	+1.2
1,869,302	+	hypE	Synpcc7942_1799	0.35	+1.1
1,869,302	+	hypE	Synpcc7942_1799	0.35	+1.1
1,869,310	-	hypE	Synpcc7942_1799	0.36	-1.6
1,869,312	+	hypE	Synpcc7942_1799	0.36	-0.6
1,869,312	+	hypE	Synpcc7942_1799	0.36	-0.3
1,869,312	+	hypE	Synpcc7942_1799	0.36	-0.6
1,869,312	+	hypE	Synpcc7942_1799	0.36	-1.2
1,869,320	-	hypE	Synpcc7942_1799	0.37	-0.6
1,869,320	-	hypE	Synpcc7942_1799	0.37	-1.2
1,869,320	-	hypE	Synpcc7942_1799	0.37	-0.3
1,869,320	-	hypE	Synpcc7942_1799	0.37	+1.0
1,869,320	-	hypE	Synpcc7942_1799	0.37	+0.4
1,869,340	-	hypE	Synpcc7942_1799	0.39	+1.0
1,869,362	-	hypE	Synpcc7942_1799	0.41	-0.6
1,869,462	+	hypE	Synpcc7942_1799	0.51	+0.6
1,869,462	+	hypE	Synpcc7942_1799	0.51	+1.4
1,869,470	-	hypE	Synpcc7942_1799	0.51	+0.3
1,869,470	-	hypE	Synpcc7942_1799	0.51	-0.2
1,869,488	+	hypE	Synpcc7942_1799	0.53	-2.9