Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1649

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
1,715,788	+		Synpcc7942_1647	0.57	+0.2
1,715,790	+		Synpcc7942_1647	0.57	+0.4
1,715,798	+		Synpcc7942_1647	0.58	-2.4
1,715,798	+		Synpcc7942_1647	0.58	-0.1
1,715,912	-		Synpcc7942_1647	0.70	+0.5
1,715,958	-				-1.5
1,715,963	+		Synpcc7942_1647	0.76	-3.2
1,715,963	+		Synpcc7942_1647	0.76	+3.3
1,715,963	+		Synpcc7942_1647	0.76	+1.1
1,715,963	+		Synpcc7942_1647	0.76	-0.0
1,715,963	-		Synpcc7942_1647	0.76	+1.1
1,715,971	-		Synpcc7942_1647	0.77	+0.2
1,715,987	-		Synpcc7942_1647	0.78	-0.1
1,715,994	-		Synpcc7942_1647	0.79	+0.5
1,716,020	-		Synpcc7942_1647	0.82	-0.2
1,716,024	+		Synpcc7942_1647	0.82	+0.6
1,716,058	-		Synpcc7942_1647	0.86	+0.5
1,716,065	+		Synpcc7942_1647	0.87	-1.1
1,716,137	-				+1.3
1,716,137	-				-0.7
1,716,138	-				-1.5
1,716,142	-				-1.1
1,716,142	-				-0.3
1,716,212	+				-2.5
1,716,212	+				+0.2
1,716,212	+				-1.5
1,716,220	-				-0.9
1,716,281	+		Synpcc7942_1648	0.20	-0.3
1,716,291	-		Synpcc7942_1648	0.23	-2.5
1,716,315	+		Synpcc7942_1648	0.28	+1.0
1,716,450	+		Synpcc7942_1648	0.58	-2.5
1,716,542	+		Synpcc7942_1648	0.78	+0.0
1,716,550	-		Synpcc7942_1648	0.80	-1.0
1,716,571	-		Synpcc7942_1648	0.85	-0.5
1,716,593	-		Synpcc7942_1648	0.90	-0.7
1,716,635	+				-2.1
1,716,635	+				+0.5
1,716,638	-				+0.1
1,716,656	+				-0.4
1,716,796	+				-3.2
1,716,796	+				-1.4
1,716,800	+				-2.7
1,716,803	-				-1.9
1,716,804	-				-1.9
1,716,804	-				-3.1
1,716,804	-				-1.1
1,716,809	+				-1.9
1,716,817	-				-2.7
1,716,817	-				-3.0
1,716,820	+				-3.9
1,716,822	-				-2.1
1,716,825	+				+0.5
1,716,840	-				-2.7
1,716,852	-				-1.1
1,716,863	+		Synpcc7942_1649	0.10	-2.0
1,716,881	-		Synpcc7942_1649	0.13	-3.0
1,716,910	+		Synpcc7942_1649	0.17	-1.7
1,716,978	+		Synpcc7942_1649	0.26	-0.3
1,716,978	+		Synpcc7942_1649	0.26	-0.7
1,716,978	+		Synpcc7942_1649	0.26	-1.4
1,716,978	+		Synpcc7942_1649	0.26	-0.5
1,716,978	+		Synpcc7942_1649	0.26	-2.3
1,716,978	+		Synpcc7942_1649	0.26	-0.5
1,716,978	+		Synpcc7942_1649	0.26	-1.0
1,716,978	+		Synpcc7942_1649	0.26	-0.1
1,716,981	-		Synpcc7942_1649	0.27	-3.2
1,716,986	-		Synpcc7942_1649	0.28	-1.9
1,716,986	-		Synpcc7942_1649	0.28	+1.6
1,716,996	-		Synpcc7942_1649	0.29	-3.0
1,717,014	+		Synpcc7942_1649	0.32	-3.5
1,717,014	+		Synpcc7942_1649	0.32	-1.1
1,717,035	+		Synpcc7942_1649	0.34	-0.5
1,717,081	+		Synpcc7942_1649	0.41	+0.1
1,717,089	-		Synpcc7942_1649	0.42	+0.3
1,717,110	+		Synpcc7942_1649	0.45	+0.5
1,717,149	+		Synpcc7942_1649	0.50	-1.5
1,717,156	-		Synpcc7942_1649	0.51	-0.8
1,717,200	-		Synpcc7942_1649	0.57	-2.7
1,717,220	+		Synpcc7942_1649	0.60	-1.5
1,717,225	+		Synpcc7942_1649	0.61	-2.9
1,717,230	-		Synpcc7942_1649	0.62	-3.5
1,717,240	+		Synpcc7942_1649	0.63	-1.9
1,717,245	+		Synpcc7942_1649	0.64	-3.0
1,717,248	-		Synpcc7942_1649	0.64	-1.4
1,717,248	-		Synpcc7942_1649	0.64	-1.9
1,717,248	-		Synpcc7942_1649	0.64	-0.0
1,717,250	+		Synpcc7942_1649	0.64	+2.0
1,717,260	+		Synpcc7942_1649	0.66	-2.1
1,717,265	+		Synpcc7942_1649	0.67	-1.5
1,717,268	-		Synpcc7942_1649	0.67	+0.5
1,717,268	-		Synpcc7942_1649	0.67	-2.5
1,717,268	-		Synpcc7942_1649	0.67	-1.9
1,717,274	+		Synpcc7942_1649	0.68	-2.0
1,717,282	-		Synpcc7942_1649	0.69	-2.4
1,717,282	-		Synpcc7942_1649	0.69	-2.1
1,717,312	+		Synpcc7942_1649	0.73	-1.5
1,717,442	-				-1.1
1,717,484	-				+0.2
1,717,530	-				-1.8
1,717,545	-				+1.0
1,717,557	-				-2.2
1,717,593	+				+0.2
1,717,627	+				+3.8
1,717,627	+				+2.7
1,717,627	+				-0.5
1,717,635	-				-0.2
1,717,698	+				-1.5
1,717,739	+				-2.0
1,717,747	-				-1.9
1,717,773	-				-3.5
1,717,828	+				-1.9
1,717,836	-				+2.5
1,717,869	-				-0.9
1,717,889	+				+0.5
1,717,899	-				-2.1
1,717,899	-				-1.4
1,717,899	-				-1.1
1,717,907	+				+0.4
1,717,908	+				-0.5
1,717,916	-				-0.5
1,717,916	-				+0.5
1,718,030	+				+2.5
1,718,038	-		Synpcc7942_1650	0.10	+0.6
1,718,293	+		Synpcc7942_1650	0.18	+0.3
1,718,375	+		Synpcc7942_1650	0.21	-1.2
1,718,440	-		Synpcc7942_1650	0.23	-1.5
1,718,476	-		Synpcc7942_1650	0.24	-1.9
1,718,476	-		Synpcc7942_1650	0.24	+0.0
1,718,497	-		Synpcc7942_1650	0.24	-0.9