Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1635

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
1,701,827	-		Synpcc7942_1633	0.63	+0.8
1,701,942	+		Synpcc7942_1633	0.79	-0.5
1,702,291	-		Synpcc7942_1634	0.33	-1.5
1,702,316	-		Synpcc7942_1634	0.38	+1.5
1,702,358	+		Synpcc7942_1634	0.45	+2.4
1,702,437	-				+0.5
1,702,770	+				-1.1
1,702,770	+				+1.1
1,702,778	-				-1.5
1,702,885	-				-3.3
1,702,915	+				-2.8
1,702,921	+				-3.5
1,703,133	-	somB2	Synpcc7942_1635	0.19	-2.6
1,703,271	-	somB2	Synpcc7942_1635	0.27	-2.1
1,703,327	+	somB2	Synpcc7942_1635	0.31	-1.1
1,703,333	+	somB2	Synpcc7942_1635	0.31	-0.5
1,703,348	-	somB2	Synpcc7942_1635	0.32	-4.2
1,703,357	+	somB2	Synpcc7942_1635	0.32	-3.8
1,703,360	-	somB2	Synpcc7942_1635	0.33	-3.1
1,703,365	-	somB2	Synpcc7942_1635	0.33	-4.4
1,703,412	+	somB2	Synpcc7942_1635	0.36	-3.5
1,703,467	-	somB2	Synpcc7942_1635	0.39	-5.4
1,703,579	+	somB2	Synpcc7942_1635	0.46	-1.5
1,703,654	+	somB2	Synpcc7942_1635	0.50	+0.5
1,703,732	+	somB2	Synpcc7942_1635	0.55	-1.1
1,703,738	-	somB2	Synpcc7942_1635	0.56	-1.9
1,703,740	-	somB2	Synpcc7942_1635	0.56	-1.5
1,703,765	+	somB2	Synpcc7942_1635	0.57	-2.5
1,703,765	+	somB2	Synpcc7942_1635	0.57	-2.1
1,703,773	-	somB2	Synpcc7942_1635	0.58	-1.5
1,703,773	-	somB2	Synpcc7942_1635	0.58	-3.9
1,703,773	-	somB2	Synpcc7942_1635	0.58	-2.1
1,703,773	-	somB2	Synpcc7942_1635	0.58	-1.5
1,703,827	+	somB2	Synpcc7942_1635	0.61	-3.5
1,703,827	+	somB2	Synpcc7942_1635	0.61	+0.5
1,703,835	-	somB2	Synpcc7942_1635	0.61	-1.1
1,703,835	-	somB2	Synpcc7942_1635	0.61	-2.9
1,703,835	-	somB2	Synpcc7942_1635	0.61	-1.1
1,703,844	-	somB2	Synpcc7942_1635	0.62	-0.1
1,703,844	-	somB2	Synpcc7942_1635	0.62	-0.5
1,703,844	-	somB2	Synpcc7942_1635	0.62	-2.1
1,703,862	+	somB2	Synpcc7942_1635	0.63	-3.0
1,703,870	-	somB2	Synpcc7942_1635	0.64	-1.9
1,703,873	+	somB2	Synpcc7942_1635	0.64	-1.5
1,703,881	-	somB2	Synpcc7942_1635	0.64	-1.1
1,703,881	-	somB2	Synpcc7942_1635	0.64	-1.9
1,703,881	-	somB2	Synpcc7942_1635	0.64	-3.5
1,703,990	-	somB2	Synpcc7942_1635	0.71	-3.6
1,704,011	-	somB2	Synpcc7942_1635	0.72	-3.6
1,704,300	-	somB2	Synpcc7942_1635	0.90	-1.9
1,704,302	+	somB2	Synpcc7942_1635	0.90	-2.3
1,704,322	-				-3.9
1,704,337	-				-3.4
1,704,367	+				-1.5
1,704,561	+				-1.5
1,704,565	+				+0.1
1,704,579	-				-0.5
1,704,612	-				-1.1
1,704,612	-				-1.9
1,704,614	+				-0.9
1,704,641	-				+0.3
1,704,648	+	dcoHI	Synpcc7942_1636	0.10	-0.3
1,704,649	+	dcoHI	Synpcc7942_1636	0.11	-2.0
1,704,696	+				+0.5
1,704,701	-	dcoHI	Synpcc7942_1636	0.23	-0.5
1,704,704	-	dcoHI	Synpcc7942_1636	0.24	-1.5
1,704,769	-	dcoHI	Synpcc7942_1636	0.40	-0.5
1,704,770	+	dcoHI	Synpcc7942_1636	0.40	-0.5
1,704,840	+	dcoHI	Synpcc7942_1636	0.57	+0.8
1,704,865	+	dcoHI	Synpcc7942_1636	0.63	+0.5
1,704,873	-	dcoHI	Synpcc7942_1636	0.65	+0.5
1,704,875	-				+0.5
1,704,875	-	dcoHI	Synpcc7942_1636	0.66	+0.5
1,704,877	+	dcoHI	Synpcc7942_1636	0.66	-2.2
1,704,877	+	dcoHI	Synpcc7942_1636	0.66	-1.7
1,704,880	-	dcoHI	Synpcc7942_1636	0.67	-2.1
1,704,932	-	dcoHI	Synpcc7942_1636	0.80	+0.1
1,704,933	+	dcoHI	Synpcc7942_1636	0.80	+0.5
1,704,933	-	dcoHI	Synpcc7942_1636	0.80	-2.1
1,704,940	+	dcoHI	Synpcc7942_1636	0.82	-1.1
1,704,944	+	dcoHI	Synpcc7942_1636	0.83	+0.6
1,704,945	+	dcoHI	Synpcc7942_1636	0.83	-2.3
1,704,948	-	dcoHI	Synpcc7942_1636	0.84	+1.9
1,704,948	-	dcoHI	Synpcc7942_1636	0.84	+2.3
1,704,948	-	dcoHI	Synpcc7942_1636	0.84	+1.2
1,704,972	+	dcoHI	Synpcc7942_1636	0.90	+0.5
1,704,978	+				+1.1
1,704,980	-				-1.0
1,704,994	+				-0.5
1,705,002	-				+0.5
1,705,002	-				-0.3
1,705,004	+				+1.2
1,705,012	-				+2.4
1,705,017	+				+2.5
1,705,020	-				-0.2
1,705,027	+				+0.8
1,705,027	-				+2.1
1,705,098	+				-2.3
1,705,106	-				+0.2
1,705,106	-				-0.7
1,705,127	+				-1.7
1,705,166	-				-0.9
1,705,213	-				-1.4
1,705,270	+				+0.8
1,705,282	+				-0.5
1,705,295	+				-0.1
1,705,326	-				-1.9
1,705,326	-				-0.2
1,705,344	+				+0.6
1,705,352	-				-3.6
1,705,352	-				+0.8
1,705,377	+				+0.6
1,705,377	+				-0.5
1,705,377	+				-0.4
1,705,377	+				-2.1
1,705,385	-				+1.1
1,705,385	-				-1.9
1,705,433	+				-1.1
1,705,441	-				-1.1