Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1418

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
1,470,990	+				+1.5
1,470,990	+				-0.5
1,470,990	+				+1.4
1,471,011	+				+2.5
1,471,018	-				+1.7
1,471,104	+		Synpcc7942_1417	0.11	+0.5
1,471,104	-		Synpcc7942_1417	0.11	-2.8
1,471,165	+		Synpcc7942_1417	0.17	-0.1
1,471,173	-		Synpcc7942_1417	0.18	-0.5
1,471,178	-		Synpcc7942_1417	0.18	-0.5
1,471,183	-		Synpcc7942_1417	0.19	-0.9
1,471,185	+		Synpcc7942_1417	0.19	-0.5
1,471,193	-		Synpcc7942_1417	0.20	+2.9
1,471,195	+		Synpcc7942_1417	0.20	-1.8
1,471,203	-		Synpcc7942_1417	0.21	-0.1
1,471,204	-		Synpcc7942_1417	0.21	+0.2
1,471,264	+		Synpcc7942_1417	0.27	+0.5
1,471,267	-		Synpcc7942_1417	0.27	-1.5
1,471,280	+		Synpcc7942_1417	0.28	-2.1
1,471,280	+		Synpcc7942_1417	0.28	+0.5
1,471,288	-		Synpcc7942_1417	0.29	-2.4
1,471,288	-		Synpcc7942_1417	0.29	-0.5
1,471,469	+		Synpcc7942_1417	0.48	+1.9
1,471,513	+		Synpcc7942_1417	0.52	-2.7
1,471,521	-		Synpcc7942_1417	0.53	-0.1
1,471,548	-		Synpcc7942_1417	0.56	-1.1
1,471,565	-		Synpcc7942_1417	0.57	-0.5
1,471,567	+		Synpcc7942_1417	0.58	-1.0
1,471,567	+		Synpcc7942_1417	0.58	-0.5
1,471,567	+		Synpcc7942_1417	0.58	+0.2
1,471,567	+		Synpcc7942_1417	0.58	+0.5
1,471,575	-		Synpcc7942_1417	0.58	+0.1
1,471,575	-		Synpcc7942_1417	0.58	+0.5
1,471,575	-		Synpcc7942_1417	0.58	-2.3
1,471,575	-		Synpcc7942_1417	0.58	+1.2
1,471,580	-		Synpcc7942_1417	0.59	+0.3
1,471,582	+		Synpcc7942_1417	0.59	-0.5
1,471,590	+		Synpcc7942_1417	0.60	+1.1
1,471,590	+		Synpcc7942_1417	0.60	-1.5
1,471,590	-		Synpcc7942_1417	0.60	-0.5
1,471,590	-		Synpcc7942_1417	0.60	-1.1
1,471,591	-		Synpcc7942_1417	0.60	-2.7
1,471,593	+		Synpcc7942_1417	0.60	-1.1
1,471,598	-		Synpcc7942_1417	0.61	+3.1
1,471,598	-		Synpcc7942_1417	0.61	+1.6
1,471,616	+		Synpcc7942_1417	0.63	-0.5
1,471,622	-		Synpcc7942_1417	0.63	-2.1
1,471,624	-		Synpcc7942_1417	0.63	-0.3
1,471,634	-		Synpcc7942_1417	0.64	-1.1
1,471,690	-		Synpcc7942_1417	0.70	-1.1
1,471,808	-		Synpcc7942_1417	0.82	-1.1
1,471,808	-		Synpcc7942_1417	0.82	-1.5
1,471,845	+		Synpcc7942_1417	0.86	-1.5
1,471,866	-		Synpcc7942_1417	0.88	-1.2
1,471,871	-		Synpcc7942_1417	0.89	+0.4
1,471,891	-				+1.7
1,471,892	-				+2.2
1,471,907	-				+0.5
1,471,918	-				+2.7
1,471,958	+				+0.0
1,471,965	+				+0.1
1,471,972	-				+0.5
1,471,973	-				+2.4
1,471,977	+				-3.1
1,471,977	+				+0.2
1,471,977	+				-1.8
1,471,979	-				+1.9
1,471,985	-				+0.7
1,471,985	-				+1.5
1,471,985	-				+1.5
1,471,985	-				-0.4
1,471,993	+				+0.6
1,471,993	+				-1.1
1,471,993	+				+0.5
1,472,000	+				-1.1
1,472,001	-	ccmJ	Synpcc7942_1418	0.10	-1.4
1,472,001	-	ccmJ	Synpcc7942_1418	0.10	-1.8
1,472,001	-	ccmJ	Synpcc7942_1418	0.10	+0.5
1,472,012	+	ccmJ	Synpcc7942_1418	0.15	-1.5
1,472,063	+	ccmJ	Synpcc7942_1418	0.40	+0.5
1,472,085	+	ccmJ	Synpcc7942_1418	0.51	-1.8
1,472,095	+	ccmJ	Synpcc7942_1418	0.56	-1.5
1,472,143	-	ccmJ	Synpcc7942_1418	0.79	-1.5
1,472,182	+				+1.7
1,472,182	+				-1.0
1,472,182	+				+0.9
1,472,190	-				+2.4
1,472,190	-				-0.2
1,472,242	-				+1.2
1,472,275	+				-1.8
1,472,327	-				-0.5
1,472,490	+				+1.3
1,472,490	+				+1.3
1,472,498	-				+1.1
1,472,498	-				-2.3
1,472,574	-				-2.2
1,472,696	-	chlL	Synpcc7942_1419	0.13	-0.5
1,472,746	+	chlL	Synpcc7942_1419	0.19	+0.5
1,472,767	+	chlL	Synpcc7942_1419	0.21	-1.1
1,472,785	+	chlL	Synpcc7942_1419	0.23	+0.7
1,472,866	-	chlL	Synpcc7942_1419	0.33	-1.0
1,473,090	+	chlL	Synpcc7942_1419	0.59	+0.7
1,473,090	+	chlL	Synpcc7942_1419	0.59	-2.5
1,473,090	+	chlL	Synpcc7942_1419	0.59	-0.8
1,473,096	-	chlL	Synpcc7942_1419	0.59	-0.1
1,473,098	-	chlL	Synpcc7942_1419	0.60	+0.5
1,473,098	-	chlL	Synpcc7942_1419	0.60	-1.1