Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1043

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
1,054,973	-		Synpcc7942_1040	0.45	-1.2
1,055,002	-		Synpcc7942_1040	0.50	+1.9
1,055,002	-		Synpcc7942_1040	0.50	+0.4
1,055,009	+		Synpcc7942_1040	0.51	-1.9
1,055,097	+		Synpcc7942_1040	0.67	-1.0
1,055,164	-		Synpcc7942_1040	0.79	+0.8
1,055,176	+		Synpcc7942_1040	0.81	-2.8
1,055,201	-		Synpcc7942_1040	0.86	+0.4
1,055,201	-		Synpcc7942_1040	0.86	-0.5
1,055,228	-				-1.6
1,055,243	-				+0.2
1,055,243	-				+3.5
1,055,243	-				-3.7
1,055,243	-				+0.1
1,055,272	+				-2.3
1,055,280	-				+0.8
1,055,304	-				-2.2
1,055,307	+				-1.2
1,055,313	+				+0.8
1,055,318	+				-0.9
1,055,369	+				+1.8
1,055,369	+				-1.6
1,055,377	-		Synpcc7942_1041	0.10	-0.8
1,055,394	-		Synpcc7942_1041	0.16	-0.0
1,055,404	+		Synpcc7942_1041	0.20	+0.6
1,055,426	+		Synpcc7942_1041	0.28	+1.4
1,055,439	+		Synpcc7942_1041	0.33	-0.1
1,055,444	+		Synpcc7942_1041	0.35	-0.7
1,055,444	+		Synpcc7942_1041	0.35	-1.2
1,055,447	-		Synpcc7942_1041	0.36	+0.4
1,055,447	-		Synpcc7942_1041	0.36	+1.6
1,055,452	-		Synpcc7942_1041	0.38	-0.4
1,055,455	+		Synpcc7942_1041	0.39	-0.8
1,055,463	-		Synpcc7942_1041	0.42	+1.1
1,055,479	-		Synpcc7942_1041	0.48	-2.2
1,055,508	-		Synpcc7942_1041	0.58	+2.6
1,055,524	+		Synpcc7942_1041	0.64	+0.6
1,055,532	-		Synpcc7942_1041	0.67	+0.1
1,055,534	+		Synpcc7942_1041	0.68	+3.4
1,055,534	+		Synpcc7942_1041	0.68	-1.2
1,055,537	-		Synpcc7942_1041	0.69	+0.4
1,055,611	-				-1.4
1,055,655	-				-1.1
1,055,729	-		Synpcc7942_1042	0.25	+0.8
1,055,731	+		Synpcc7942_1042	0.26	-0.9
1,055,739	-		Synpcc7942_1042	0.28	-0.6
1,055,740	-		Synpcc7942_1042	0.28	+1.4
1,055,740	-		Synpcc7942_1042	0.28	+0.6
1,055,864	-		Synpcc7942_1042	0.65	+0.2
1,055,867	+		Synpcc7942_1042	0.66	+1.2
1,055,931	+		Synpcc7942_1042	0.85	+0.4
1,055,931	+		Synpcc7942_1042	0.85	-2.6
1,055,939	-		Synpcc7942_1042	0.88	+0.4
1,055,941	+		Synpcc7942_1042	0.88	+1.7
1,055,965	+				+2.7
1,055,980	-				+0.3
1,056,011	+				-1.2
1,056,011	+				-2.4
1,056,019	-				-0.3
1,056,019	-				-0.0
1,056,103	+	vte5	Synpcc7942_1043	0.20	-3.5
1,056,110	+	vte5	Synpcc7942_1043	0.22	-2.1
1,056,110	+				-0.6
1,056,110	+	vte5	Synpcc7942_1043	0.22	-1.3
1,056,110	+	vte5	Synpcc7942_1043	0.22	-0.7
1,056,111	-	vte5	Synpcc7942_1043	0.22	-0.6
1,056,111	-	vte5	Synpcc7942_1043	0.22	-1.5
1,056,111	-	vte5	Synpcc7942_1043	0.22	-1.9
1,056,111	-	vte5	Synpcc7942_1043	0.22	+0.8
1,056,115	+	vte5	Synpcc7942_1043	0.22	-1.2
1,056,124	-	vte5	Synpcc7942_1043	0.24	-2.2
1,056,250	+	vte5	Synpcc7942_1043	0.43	-3.7
1,056,250	+	vte5	Synpcc7942_1043	0.43	-1.6
1,056,250	+	vte5	Synpcc7942_1043	0.43	-2.4
1,056,264	+	vte5	Synpcc7942_1043	0.45	-2.4
1,056,286	-	vte5	Synpcc7942_1043	0.48	-1.3
1,056,323	+				+0.4
1,056,413	+	vte5	Synpcc7942_1043	0.68	+0.0
1,056,426	+	vte5	Synpcc7942_1043	0.70	-2.4
1,056,426	+	vte5	Synpcc7942_1043	0.70	-0.6
1,056,434	-	vte5	Synpcc7942_1043	0.71	-1.8
1,056,529	+	vte5	Synpcc7942_1043	0.86	-0.6
1,056,579	+				-0.8
1,056,581	+				-1.2
1,056,596	+				+1.0
1,056,620	+				-0.5
1,056,622	+				-1.8
1,056,630	-				-0.6
1,056,630	-				-2.9
1,056,638	-				-1.9
1,056,668	+				+1.1
1,056,676	-				+1.4
1,056,688	+				-0.1
1,056,696	-				-1.6
1,056,721	+				+0.7
1,056,729	-				+0.4
1,056,729	-				-0.6
1,057,472	+				-1.2
1,057,490	-				-1.0
1,057,490	-				+0.4
1,057,511	+				+0.5
1,057,513	+				+1.2
1,057,513	+				-1.6
1,057,523	+				-1.2
1,057,531	-				-2.6
1,057,541	+				+3.3
1,057,555	+				-1.6
1,057,557	-				+1.0
1,057,577	+				-1.9
1,057,577	+				-1.2
1,057,577	+				-1.4