Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0833 and Synpcc7942_0834 are separated by 399 nucleotides
Synpcc7942_0833: Synpcc7942_0833 - hypothetical protein, at 827,112 to 828,182
_0833
Synpcc7942_0834: Synpcc7942_0834 - hypothetical protein, at 828,582 to 829,235
_0834
Position (kb) 827
828
829 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 826.158 kb on + strand at 826.172 kb on - strand at 826.202 kb on - strand at 826.221 kb on - strand at 826.247 kb on - strand at 826.341 kb on + strand at 826.373 kb on - strand at 826.375 kb on + strand at 826.375 kb on + strand at 826.377 kb on + strand at 826.377 kb on + strand at 826.377 kb on + strand at 826.377 kb on + strand at 826.385 kb on - strand at 826.411 kb on + strand at 826.415 kb on - strand at 826.434 kb on + strand at 826.449 kb on - strand at 826.512 kb on - strand at 826.514 kb on + strand at 826.519 kb on - strand at 826.549 kb on + strand at 826.550 kb on + strand at 826.557 kb on - strand at 826.567 kb on + strand at 826.575 kb on - strand at 826.592 kb on - strand at 826.693 kb on - strand at 826.708 kb on + strand at 826.737 kb on - strand at 826.995 kb on - strand at 827.056 kb on - strand at 827.126 kb on + strand at 827.204 kb on + strand at 827.253 kb on - strand, within Synpcc7942_0833 at 827.259 kb on - strand, within Synpcc7942_0833 at 827.269 kb on + strand, within Synpcc7942_0833 at 827.277 kb on - strand, within Synpcc7942_0833 at 827.304 kb on + strand, within Synpcc7942_0833 at 827.370 kb on + strand, within Synpcc7942_0833 at 827.373 kb on - strand, within Synpcc7942_0833 at 827.387 kb on + strand, within Synpcc7942_0833 at 827.395 kb on - strand, within Synpcc7942_0833 at 827.395 kb on - strand, within Synpcc7942_0833 at 827.408 kb on + strand, within Synpcc7942_0833 at 827.408 kb on + strand, within Synpcc7942_0833 at 827.431 kb on + strand, within Synpcc7942_0833 at 827.431 kb on + strand, within Synpcc7942_0833 at 827.439 kb on - strand, within Synpcc7942_0833 at 827.439 kb on - strand, within Synpcc7942_0833 at 827.455 kb on + strand, within Synpcc7942_0833 at 827.466 kb on + strand, within Synpcc7942_0833 at 827.466 kb on + strand, within Synpcc7942_0833 at 827.474 kb on - strand, within Synpcc7942_0833 at 827.474 kb on - strand, within Synpcc7942_0833 at 827.489 kb on + strand, within Synpcc7942_0833 at 827.513 kb on + strand, within Synpcc7942_0833 at 827.521 kb on - strand, within Synpcc7942_0833 at 827.588 kb on - strand, within Synpcc7942_0833 at 827.627 kb on + strand, within Synpcc7942_0833 at 827.627 kb on + strand, within Synpcc7942_0833 at 827.628 kb on + strand, within Synpcc7942_0833 at 827.629 kb on + strand, within Synpcc7942_0833 at 827.636 kb on - strand, within Synpcc7942_0833 at 827.666 kb on + strand, within Synpcc7942_0833 at 827.688 kb on - strand, within Synpcc7942_0833 at 827.857 kb on - strand, within Synpcc7942_0833 at 827.866 kb on + strand, within Synpcc7942_0833 at 827.904 kb on - strand, within Synpcc7942_0833 at 827.961 kb on + strand, within Synpcc7942_0833 at 828.047 kb on + strand, within Synpcc7942_0833 at 828.047 kb on + strand, within Synpcc7942_0833 at 828.111 kb on + strand at 828.144 kb on - strand at 828.160 kb on + strand at 828.168 kb on - strand at 828.185 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.195 kb on + strand at 828.195 kb on + strand at 828.201 kb on - strand at 828.203 kb on - strand at 828.203 kb on - strand at 828.214 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.275 kb on + strand at 828.288 kb on - strand at 828.343 kb on - strand at 828.345 kb on + strand at 828.356 kb on - strand at 828.368 kb on - strand at 828.374 kb on - strand at 828.472 kb on - strand at 828.472 kb on - strand at 828.473 kb on - strand at 828.475 kb on + strand at 828.499 kb on - strand at 828.532 kb on - strand at 828.532 kb on - strand at 828.564 kb on + strand at 828.570 kb on - strand at 828.572 kb on - strand at 828.593 kb on + strand at 828.664 kb on + strand, within Synpcc7942_0834 at 828.670 kb on - strand, within Synpcc7942_0834 at 828.682 kb on - strand, within Synpcc7942_0834 at 828.719 kb on + strand, within Synpcc7942_0834 at 828.727 kb on - strand, within Synpcc7942_0834 at 828.741 kb on + strand, within Synpcc7942_0834 at 828.748 kb on + strand, within Synpcc7942_0834 at 828.749 kb on - strand, within Synpcc7942_0834 at 828.761 kb on - strand, within Synpcc7942_0834 at 828.769 kb on + strand, within Synpcc7942_0834 at 828.775 kb on + strand, within Synpcc7942_0834 at 828.783 kb on - strand, within Synpcc7942_0834 at 828.795 kb on - strand, within Synpcc7942_0834 at 828.824 kb on + strand, within Synpcc7942_0834 at 828.833 kb on + strand, within Synpcc7942_0834 at 828.896 kb on + strand, within Synpcc7942_0834 at 828.896 kb on + strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.928 kb on + strand, within Synpcc7942_0834 at 828.931 kb on + strand, within Synpcc7942_0834 at 828.936 kb on + strand, within Synpcc7942_0834 at 828.949 kb on - strand, within Synpcc7942_0834 at 828.977 kb on - strand, within Synpcc7942_0834 at 828.977 kb on - strand, within Synpcc7942_0834 at 828.985 kb on - strand, within Synpcc7942_0834 at 829.015 kb on - strand, within Synpcc7942_0834 at 829.025 kb on + strand, within Synpcc7942_0834 at 829.031 kb on - strand, within Synpcc7942_0834 at 829.158 kb on + strand, within Synpcc7942_0834 at 829.168 kb on - strand, within Synpcc7942_0834
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 826,158 + +0.7 826,172 - -0.7 826,202 - +0.6 826,221 - +1.3 826,247 - -0.6 826,341 + +0.3 826,373 - +0.3 826,375 + +0.6 826,375 + +2.5 826,377 + +0.1 826,377 + -3.0 826,377 + +1.2 826,377 + +1.2 826,385 - +0.3 826,411 + -1.2 826,415 - +1.9 826,434 + +0.6 826,449 - +1.2 826,512 - -2.7 826,514 + +0.0 826,519 - -1.9 826,549 + -2.2 826,550 + +1.3 826,557 - +1.5 826,567 + -0.1 826,575 - -0.2 826,592 - +0.3 826,693 - +0.3 826,708 + -2.7 826,737 - +2.7 826,995 - +0.3 827,056 - -1.2 827,126 + +0.8 827,204 + +0.3 827,253 - Synpcc7942_0833 0.13 -3.4 827,259 - Synpcc7942_0833 0.14 -2.7 827,269 + Synpcc7942_0833 0.15 -2.7 827,277 - Synpcc7942_0833 0.15 -1.2 827,304 + Synpcc7942_0833 0.18 +0.8 827,370 + Synpcc7942_0833 0.24 -0.8 827,373 - Synpcc7942_0833 0.24 -2.5 827,387 + Synpcc7942_0833 0.26 -1.9 827,395 - Synpcc7942_0833 0.26 -0.3 827,395 - Synpcc7942_0833 0.26 -0.2 827,408 + Synpcc7942_0833 0.28 -0.4 827,408 + Synpcc7942_0833 0.28 -1.1 827,431 + Synpcc7942_0833 0.30 -2.5 827,431 + Synpcc7942_0833 0.30 -2.0 827,439 - Synpcc7942_0833 0.31 -0.1 827,439 - Synpcc7942_0833 0.31 -4.7 827,455 + Synpcc7942_0833 0.32 -0.7 827,466 + Synpcc7942_0833 0.33 -1.7 827,466 + Synpcc7942_0833 0.33 -2.9 827,474 - Synpcc7942_0833 0.34 -0.1 827,474 - Synpcc7942_0833 0.34 -1.2 827,489 + Synpcc7942_0833 0.35 -0.7 827,513 + Synpcc7942_0833 0.37 +0.1 827,521 - Synpcc7942_0833 0.38 -1.7 827,588 - Synpcc7942_0833 0.44 -0.4 827,627 + Synpcc7942_0833 0.48 -3.7 827,627 + Synpcc7942_0833 0.48 -2.8 827,628 + Synpcc7942_0833 0.48 -3.1 827,629 + Synpcc7942_0833 0.48 -1.2 827,636 - Synpcc7942_0833 0.49 -2.1 827,666 + Synpcc7942_0833 0.52 -2.9 827,688 - Synpcc7942_0833 0.54 +0.4 827,857 - Synpcc7942_0833 0.70 +0.3 827,866 + Synpcc7942_0833 0.70 -3.4 827,904 - Synpcc7942_0833 0.74 -1.9 827,961 + Synpcc7942_0833 0.79 -3.7 828,047 + Synpcc7942_0833 0.87 -1.2 828,047 + Synpcc7942_0833 0.87 -0.3 828,111 + -2.8 828,144 - -2.0 828,160 + -1.0 828,168 - -2.2 828,185 + +0.3 828,193 + -3.0 828,193 + +0.8 828,193 + +0.6 828,193 + +0.3 828,195 + +1.9 828,195 + +0.1 828,201 - -0.7 828,203 - -2.2 828,203 - +0.3 828,214 + -3.1 828,219 + -0.9 828,219 + -1.2 828,219 + -0.3 828,219 + -0.7 828,219 + +1.4 828,219 + -3.5 828,219 + -0.2 828,227 - +2.5 828,227 - -1.7 828,227 - -1.8 828,227 - -1.0 828,227 - -0.4 828,275 + -3.7 828,288 - -0.7 828,343 - -1.2 828,345 + +1.8 828,356 - +0.2 828,368 - +0.2 828,374 - +2.0 828,472 - +3.4 828,472 - +0.5 828,473 - +0.2 828,475 + +0.8 828,499 - -0.0 828,532 - +1.7 828,532 - -2.0 828,564 + -0.7 828,570 - -1.8 828,572 - +2.5 828,593 + -0.4 828,664 + Synpcc7942_0834 0.13 -1.1 828,670 - Synpcc7942_0834 0.13 +3.2 828,682 - Synpcc7942_0834 0.15 +0.6 828,719 + Synpcc7942_0834 0.21 -1.7 828,727 - Synpcc7942_0834 0.22 -1.7 828,741 + Synpcc7942_0834 0.24 -2.0 828,748 + Synpcc7942_0834 0.25 +1.2 828,749 - Synpcc7942_0834 0.26 -0.1 828,761 - Synpcc7942_0834 0.27 +0.7 828,769 + Synpcc7942_0834 0.29 +0.3 828,775 + Synpcc7942_0834 0.30 +0.6 828,783 - Synpcc7942_0834 0.31 -0.3 828,795 - Synpcc7942_0834 0.33 +0.3 828,824 + Synpcc7942_0834 0.37 +0.9 828,833 + Synpcc7942_0834 0.38 +0.6 828,896 + Synpcc7942_0834 0.48 +0.1 828,896 + Synpcc7942_0834 0.48 -1.2 828,904 - Synpcc7942_0834 0.49 -2.5 828,904 - Synpcc7942_0834 0.49 -1.1 828,904 - Synpcc7942_0834 0.49 +0.0 828,928 + Synpcc7942_0834 0.53 +0.2 828,931 + Synpcc7942_0834 0.53 -1.7 828,936 + Synpcc7942_0834 0.54 -2.0 828,949 - Synpcc7942_0834 0.56 +3.7 828,977 - Synpcc7942_0834 0.60 -2.4 828,977 - Synpcc7942_0834 0.60 -1.5 828,985 - Synpcc7942_0834 0.62 -1.7 829,015 - Synpcc7942_0834 0.66 +1.6 829,025 + Synpcc7942_0834 0.68 +1.5 829,031 - Synpcc7942_0834 0.69 -0.4 829,158 + Synpcc7942_0834 0.88 -0.0 829,168 - Synpcc7942_0834 0.90 -1.2
Or see this region's nucleotide sequence