Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0807 and sps are separated by 171 nucleotides sps and Synpcc7942_0809 are separated by 92 nucleotides
Synpcc7942_0807: Synpcc7942_0807 - hypothetical protein, at 799,840 to 800,679
_0807
Synpcc7942_0808: sps - HAD-superfamily hydrolase subfamily IIB, at 800,851 to 802,980
sps
Synpcc7942_0809: Synpcc7942_0809 - hypothetical protein, at 803,073 to 804,815
_0809
Position (kb) 800
801
802
803 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 799.857 kb on - strand at 799.900 kb on + strand at 799.910 kb on - strand at 799.910 kb on - strand at 799.927 kb on + strand, within Synpcc7942_0807 at 799.935 kb on - strand, within Synpcc7942_0807 at 799.945 kb on - strand, within Synpcc7942_0807 at 799.957 kb on + strand, within Synpcc7942_0807 at 799.957 kb on + strand, within Synpcc7942_0807 at 799.963 kb on - strand, within Synpcc7942_0807 at 800.012 kb on + strand, within Synpcc7942_0807 at 800.087 kb on - strand, within Synpcc7942_0807 at 800.126 kb on + strand at 800.133 kb on - strand, within Synpcc7942_0807 at 800.134 kb on - strand, within Synpcc7942_0807 at 800.141 kb on + strand, within Synpcc7942_0807 at 800.149 kb on - strand, within Synpcc7942_0807 at 800.177 kb on + strand, within Synpcc7942_0807 at 800.195 kb on + strand, within Synpcc7942_0807 at 800.195 kb on + strand, within Synpcc7942_0807 at 800.220 kb on + strand, within Synpcc7942_0807 at 800.229 kb on - strand, within Synpcc7942_0807 at 800.261 kb on + strand, within Synpcc7942_0807 at 800.268 kb on + strand, within Synpcc7942_0807 at 800.269 kb on + strand, within Synpcc7942_0807 at 800.291 kb on + strand, within Synpcc7942_0807 at 800.314 kb on + strand, within Synpcc7942_0807 at 800.316 kb on + strand, within Synpcc7942_0807 at 800.339 kb on - strand, within Synpcc7942_0807 at 800.350 kb on - strand, within Synpcc7942_0807 at 800.350 kb on - strand, within Synpcc7942_0807 at 800.372 kb on - strand, within Synpcc7942_0807 at 800.372 kb on - strand, within Synpcc7942_0807 at 800.372 kb on - strand, within Synpcc7942_0807 at 800.397 kb on + strand, within Synpcc7942_0807 at 800.405 kb on - strand, within Synpcc7942_0807 at 800.429 kb on + strand, within Synpcc7942_0807 at 800.594 kb on + strand, within Synpcc7942_0807 at 800.682 kb on + strand at 800.682 kb on - strand at 800.702 kb on + strand at 800.745 kb on + strand at 800.755 kb on + strand at 800.766 kb on - strand at 800.769 kb on - strand at 800.794 kb on - strand at 800.801 kb on - strand at 800.842 kb on - strand at 800.857 kb on - strand at 800.857 kb on - strand at 800.880 kb on + strand at 800.895 kb on - strand at 800.917 kb on - strand at 800.919 kb on + strand at 800.987 kb on - strand at 801.070 kb on + strand, within sps at 801.070 kb on + strand, within sps at 801.071 kb on + strand, within sps at 801.130 kb on + strand, within sps at 801.140 kb on + strand, within sps at 801.183 kb on + strand, within sps at 801.186 kb on - strand, within sps at 801.196 kb on + strand, within sps at 801.198 kb on + strand, within sps at 801.206 kb on - strand at 801.245 kb on + strand, within sps at 801.285 kb on - strand, within sps at 801.367 kb on - strand at 801.415 kb on + strand, within sps at 801.447 kb on - strand, within sps at 801.457 kb on - strand, within sps at 801.501 kb on + strand, within sps at 801.559 kb on - strand, within sps at 801.597 kb on - strand, within sps at 801.656 kb on + strand, within sps at 801.724 kb on - strand, within sps at 801.743 kb on - strand, within sps at 801.752 kb on + strand at 801.759 kb on - strand, within sps at 801.762 kb on - strand, within sps at 801.764 kb on - strand, within sps at 801.773 kb on + strand, within sps at 801.781 kb on - strand, within sps at 801.962 kb on + strand, within sps at 801.970 kb on - strand, within sps at 801.970 kb on - strand, within sps at 801.986 kb on + strand, within sps at 801.988 kb on - strand, within sps at 801.996 kb on + strand, within sps at 802.015 kb on + strand, within sps at 802.015 kb on + strand, within sps at 802.015 kb on + strand, within sps at 802.015 kb on + strand, within sps at 802.023 kb on - strand, within sps at 802.023 kb on - strand, within sps at 802.023 kb on - strand, within sps at 802.023 kb on - strand, within sps at 802.089 kb on - strand, within sps at 802.090 kb on - strand, within sps at 802.110 kb on + strand at 802.116 kb on + strand, within sps at 802.118 kb on - strand, within sps at 802.118 kb on - strand, within sps at 802.119 kb on - strand, within sps at 802.140 kb on + strand, within sps at 802.148 kb on - strand, within sps at 802.149 kb on - strand, within sps at 802.173 kb on - strand, within sps at 802.191 kb on - strand, within sps at 802.246 kb on + strand, within sps at 802.247 kb on - strand, within sps at 802.254 kb on - strand, within sps at 802.254 kb on - strand, within sps at 802.328 kb on - strand, within sps at 802.331 kb on + strand, within sps at 802.331 kb on + strand, within sps at 802.338 kb on + strand, within sps at 802.343 kb on + strand, within sps at 802.346 kb on - strand, within sps at 802.351 kb on - strand, within sps at 802.391 kb on + strand, within sps at 802.412 kb on + strand, within sps at 802.412 kb on + strand, within sps at 802.420 kb on - strand at 802.430 kb on - strand, within sps at 802.455 kb on - strand, within sps at 802.553 kb on + strand, within sps at 802.575 kb on - strand, within sps at 802.580 kb on - strand, within sps at 802.580 kb on - strand, within sps at 802.593 kb on + strand, within sps at 802.598 kb on + strand, within sps at 802.598 kb on + strand, within sps at 802.604 kb on - strand, within sps at 802.616 kb on - strand, within sps at 802.662 kb on + strand, within sps at 802.669 kb on + strand, within sps at 802.670 kb on + strand at 802.670 kb on + strand, within sps at 802.671 kb on - strand, within sps at 802.677 kb on - strand, within sps at 802.677 kb on - strand, within sps at 802.687 kb on + strand, within sps at 802.690 kb on - strand, within sps at 802.695 kb on - strand, within sps at 802.697 kb on + strand, within sps at 802.712 kb on - strand, within sps at 802.749 kb on + strand, within sps at 802.756 kb on + strand, within sps at 802.772 kb on + strand at 802.784 kb on - strand at 802.784 kb on - strand at 802.802 kb on - strand at 802.841 kb on + strand at 802.847 kb on + strand at 802.857 kb on + strand at 802.861 kb on - strand at 802.861 kb on - strand at 802.863 kb on + strand at 802.871 kb on - strand at 802.871 kb on - strand at 802.873 kb on - strand at 802.878 kb on - strand at 802.882 kb on - strand at 802.882 kb on - strand at 802.919 kb on - strand at 802.937 kb on + strand at 802.940 kb on - strand at 802.981 kb on + strand at 802.992 kb on - strand at 803.010 kb on + strand at 803.017 kb on - strand at 803.053 kb on - strand at 803.056 kb on + strand at 803.067 kb on + strand at 803.121 kb on - strand at 803.131 kb on + strand at 803.139 kb on - strand at 803.144 kb on + strand at 803.162 kb on - strand at 803.170 kb on + strand at 803.175 kb on + strand at 803.193 kb on + strand at 803.203 kb on + strand at 803.203 kb on + strand at 803.211 kb on - strand at 803.213 kb on + strand at 803.216 kb on + strand at 803.216 kb on + strand at 803.234 kb on - strand at 803.260 kb on + strand, within Synpcc7942_0809 at 803.260 kb on + strand, within Synpcc7942_0809 at 803.260 kb on + strand, within Synpcc7942_0809 at 803.268 kb on - strand, within Synpcc7942_0809 at 803.278 kb on - strand, within Synpcc7942_0809 at 803.283 kb on + strand at 803.289 kb on + strand, within Synpcc7942_0809 at 803.289 kb on + strand, within Synpcc7942_0809 at 803.289 kb on + strand, within Synpcc7942_0809 at 803.289 kb on + strand, within Synpcc7942_0809 at 803.297 kb on - strand, within Synpcc7942_0809 at 803.297 kb on - strand, within Synpcc7942_0809 at 803.297 kb on - strand, within Synpcc7942_0809 at 803.326 kb on - strand, within Synpcc7942_0809 at 803.362 kb on - strand, within Synpcc7942_0809 at 803.381 kb on + strand, within Synpcc7942_0809 at 803.384 kb on - strand, within Synpcc7942_0809 at 803.394 kb on - strand, within Synpcc7942_0809 at 803.410 kb on - strand, within Synpcc7942_0809 at 803.429 kb on + strand, within Synpcc7942_0809 at 803.448 kb on + strand, within Synpcc7942_0809 at 803.450 kb on - strand, within Synpcc7942_0809 at 803.483 kb on + strand, within Synpcc7942_0809 at 803.519 kb on - strand, within Synpcc7942_0809 at 803.519 kb on - strand, within Synpcc7942_0809 at 803.552 kb on - strand, within Synpcc7942_0809 at 803.569 kb on - strand, within Synpcc7942_0809 at 803.595 kb on - strand, within Synpcc7942_0809 at 803.595 kb on - strand, within Synpcc7942_0809 at 803.614 kb on + strand, within Synpcc7942_0809 at 803.621 kb on - strand, within Synpcc7942_0809 at 803.621 kb on - strand, within Synpcc7942_0809 at 803.633 kb on - strand, within Synpcc7942_0809 at 803.639 kb on + strand, within Synpcc7942_0809 at 803.677 kb on - strand, within Synpcc7942_0809 at 803.719 kb on + strand, within Synpcc7942_0809 at 803.731 kb on + strand, within Synpcc7942_0809 at 803.782 kb on + strand, within Synpcc7942_0809 at 803.792 kb on - strand, within Synpcc7942_0809 at 803.858 kb on - strand, within Synpcc7942_0809 at 803.858 kb on - strand, within Synpcc7942_0809 at 803.863 kb on - strand, within Synpcc7942_0809 at 803.880 kb on - strand, within Synpcc7942_0809
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 799,857 - +1.9 799,900 + -1.4 799,910 - -0.1 799,910 - -2.7 799,927 + Synpcc7942_0807 0.10 -1.3 799,935 - Synpcc7942_0807 0.11 +0.9 799,945 - Synpcc7942_0807 0.12 +1.4 799,957 + Synpcc7942_0807 0.14 -0.9 799,957 + Synpcc7942_0807 0.14 +2.7 799,963 - Synpcc7942_0807 0.15 +0.4 800,012 + Synpcc7942_0807 0.20 -2.9 800,087 - Synpcc7942_0807 0.29 -1.2 800,126 + -0.6 800,133 - Synpcc7942_0807 0.35 -0.6 800,134 - Synpcc7942_0807 0.35 -1.6 800,141 + Synpcc7942_0807 0.36 -1.2 800,149 - Synpcc7942_0807 0.37 -2.6 800,177 + Synpcc7942_0807 0.40 +1.7 800,195 + Synpcc7942_0807 0.42 -0.1 800,195 + Synpcc7942_0807 0.42 -2.2 800,220 + Synpcc7942_0807 0.45 -0.3 800,229 - Synpcc7942_0807 0.46 +4.8 800,261 + Synpcc7942_0807 0.50 +0.0 800,268 + Synpcc7942_0807 0.51 -2.2 800,269 + Synpcc7942_0807 0.51 -0.5 800,291 + Synpcc7942_0807 0.54 -0.4 800,314 + Synpcc7942_0807 0.56 +0.3 800,316 + Synpcc7942_0807 0.57 +3.2 800,339 - Synpcc7942_0807 0.59 -2.2 800,350 - Synpcc7942_0807 0.61 +0.9 800,350 - Synpcc7942_0807 0.61 +1.8 800,372 - Synpcc7942_0807 0.63 +1.4 800,372 - Synpcc7942_0807 0.63 -0.0 800,372 - Synpcc7942_0807 0.63 -1.2 800,397 + Synpcc7942_0807 0.66 -0.6 800,405 - Synpcc7942_0807 0.67 +2.2 800,429 + Synpcc7942_0807 0.70 -1.8 800,594 + Synpcc7942_0807 0.90 +0.3 800,682 + +1.1 800,682 - -0.5 800,702 + +0.4 800,745 + +0.5 800,755 + -1.2 800,766 - -0.1 800,769 - +0.4 800,794 - -1.3 800,801 - -3.8 800,842 - +0.8 800,857 - -0.1 800,857 - +1.6 800,880 + +1.3 800,895 - +0.9 800,917 - -0.2 800,919 + -2.0 800,987 - -0.6 801,070 + sps Synpcc7942_0808 0.10 +0.6 801,070 + sps Synpcc7942_0808 0.10 -2.0 801,071 + sps Synpcc7942_0808 0.10 -1.6 801,130 + sps Synpcc7942_0808 0.13 +1.6 801,140 + sps Synpcc7942_0808 0.14 +4.3 801,183 + sps Synpcc7942_0808 0.16 +0.4 801,186 - sps Synpcc7942_0808 0.16 +1.9 801,196 + sps Synpcc7942_0808 0.16 -0.6 801,198 + sps Synpcc7942_0808 0.16 +0.9 801,206 - -2.0 801,245 + sps Synpcc7942_0808 0.18 -1.2 801,285 - sps Synpcc7942_0808 0.20 +0.9 801,367 - +0.4 801,415 + sps Synpcc7942_0808 0.26 +0.9 801,447 - sps Synpcc7942_0808 0.28 +1.5 801,457 - sps Synpcc7942_0808 0.28 +0.2 801,501 + sps Synpcc7942_0808 0.31 +0.8 801,559 - sps Synpcc7942_0808 0.33 -0.9 801,597 - sps Synpcc7942_0808 0.35 +0.2 801,656 + sps Synpcc7942_0808 0.38 +2.5 801,724 - sps Synpcc7942_0808 0.41 +1.6 801,743 - sps Synpcc7942_0808 0.42 -2.0 801,752 + +0.4 801,759 - sps Synpcc7942_0808 0.43 -0.2 801,762 - sps Synpcc7942_0808 0.43 -0.6 801,764 - sps Synpcc7942_0808 0.43 +0.3 801,773 + sps Synpcc7942_0808 0.43 -0.2 801,781 - sps Synpcc7942_0808 0.44 -0.4 801,962 + sps Synpcc7942_0808 0.52 -0.6 801,970 - sps Synpcc7942_0808 0.53 -2.4 801,970 - sps Synpcc7942_0808 0.53 +1.6 801,986 + sps Synpcc7942_0808 0.53 -1.2 801,988 - sps Synpcc7942_0808 0.53 -2.0 801,996 + sps Synpcc7942_0808 0.54 +1.0 802,015 + sps Synpcc7942_0808 0.55 -1.2 802,015 + sps Synpcc7942_0808 0.55 +0.4 802,015 + sps Synpcc7942_0808 0.55 -0.9 802,015 + sps Synpcc7942_0808 0.55 -0.4 802,023 - sps Synpcc7942_0808 0.55 +2.1 802,023 - sps Synpcc7942_0808 0.55 -1.0 802,023 - sps Synpcc7942_0808 0.55 -0.2 802,023 - sps Synpcc7942_0808 0.55 -1.4 802,089 - sps Synpcc7942_0808 0.58 -0.2 802,090 - sps Synpcc7942_0808 0.58 +1.8 802,110 + -1.6 802,116 + sps Synpcc7942_0808 0.59 +1.6 802,118 - sps Synpcc7942_0808 0.59 -0.1 802,118 - sps Synpcc7942_0808 0.59 +2.3 802,119 - sps Synpcc7942_0808 0.60 +0.9 802,140 + sps Synpcc7942_0808 0.61 -1.2 802,148 - sps Synpcc7942_0808 0.61 +2.4 802,149 - sps Synpcc7942_0808 0.61 -1.6 802,173 - sps Synpcc7942_0808 0.62 +3.3 802,191 - sps Synpcc7942_0808 0.63 +0.0 802,246 + sps Synpcc7942_0808 0.65 +1.8 802,247 - sps Synpcc7942_0808 0.66 -2.2 802,254 - sps Synpcc7942_0808 0.66 -2.2 802,254 - sps Synpcc7942_0808 0.66 -0.1 802,328 - sps Synpcc7942_0808 0.69 +2.5 802,331 + sps Synpcc7942_0808 0.69 -0.6 802,331 + sps Synpcc7942_0808 0.69 -1.4 802,338 + sps Synpcc7942_0808 0.70 +2.1 802,343 + sps Synpcc7942_0808 0.70 -0.6 802,346 - sps Synpcc7942_0808 0.70 -2.0 802,351 - sps Synpcc7942_0808 0.70 -2.3 802,391 + sps Synpcc7942_0808 0.72 -1.6 802,412 + sps Synpcc7942_0808 0.73 +0.9 802,412 + sps Synpcc7942_0808 0.73 -1.7 802,420 - -0.6 802,430 - sps Synpcc7942_0808 0.74 +1.3 802,455 - sps Synpcc7942_0808 0.75 +0.8 802,553 + sps Synpcc7942_0808 0.80 -0.1 802,575 - sps Synpcc7942_0808 0.81 +1.0 802,580 - sps Synpcc7942_0808 0.81 +0.2 802,580 - sps Synpcc7942_0808 0.81 +0.9 802,593 + sps Synpcc7942_0808 0.82 -1.6 802,598 + sps Synpcc7942_0808 0.82 -1.2 802,598 + sps Synpcc7942_0808 0.82 +1.4 802,604 - sps Synpcc7942_0808 0.82 -1.2 802,616 - sps Synpcc7942_0808 0.83 -0.5 802,662 + sps Synpcc7942_0808 0.85 -1.4 802,669 + sps Synpcc7942_0808 0.85 -0.3 802,670 + -0.6 802,670 + sps Synpcc7942_0808 0.85 +0.8 802,671 - sps Synpcc7942_0808 0.85 +0.8 802,677 - sps Synpcc7942_0808 0.86 +4.2 802,677 - sps Synpcc7942_0808 0.86 +0.4 802,687 + sps Synpcc7942_0808 0.86 -2.6 802,690 - sps Synpcc7942_0808 0.86 -2.6 802,695 - sps Synpcc7942_0808 0.87 +3.1 802,697 + sps Synpcc7942_0808 0.87 +0.4 802,712 - sps Synpcc7942_0808 0.87 -2.4 802,749 + sps Synpcc7942_0808 0.89 +0.4 802,756 + sps Synpcc7942_0808 0.89 -0.3 802,772 + -2.0 802,784 - -0.2 802,784 - +1.2 802,802 - -1.6 802,841 + +1.4 802,847 + -0.1 802,857 + +0.9 802,861 - -0.6 802,861 - -0.6 802,863 + -1.6 802,871 - +0.1 802,871 - -1.6 802,873 - +2.9 802,878 - -2.3 802,882 - -0.6 802,882 - +0.9 802,919 - +0.4 802,937 + -2.0 802,940 - -0.6 802,981 + +2.3 802,992 - +1.4 803,010 + -0.3 803,017 - +0.3 803,053 - -1.6 803,056 + -2.0 803,067 + -0.3 803,121 - -1.6 803,131 + +0.7 803,139 - -1.0 803,144 + -2.4 803,162 - +0.1 803,170 + -1.6 803,175 + -2.2 803,193 + -2.0 803,203 + +0.4 803,203 + -0.6 803,211 - -1.8 803,213 + -1.6 803,216 + +0.0 803,216 + -0.3 803,234 - -0.6 803,260 + Synpcc7942_0809 0.11 -2.6 803,260 + Synpcc7942_0809 0.11 -2.0 803,260 + Synpcc7942_0809 0.11 -0.6 803,268 - Synpcc7942_0809 0.11 -1.0 803,278 - Synpcc7942_0809 0.12 -2.2 803,283 + +0.4 803,289 + Synpcc7942_0809 0.12 -2.4 803,289 + Synpcc7942_0809 0.12 -1.2 803,289 + Synpcc7942_0809 0.12 -0.6 803,289 + Synpcc7942_0809 0.12 -1.2 803,297 - Synpcc7942_0809 0.13 -1.1 803,297 - Synpcc7942_0809 0.13 -3.0 803,297 - Synpcc7942_0809 0.13 +1.4 803,326 - Synpcc7942_0809 0.15 -3.1 803,362 - Synpcc7942_0809 0.17 -0.6 803,381 + Synpcc7942_0809 0.18 +0.1 803,384 - Synpcc7942_0809 0.18 -1.6 803,394 - Synpcc7942_0809 0.18 -0.0 803,410 - Synpcc7942_0809 0.19 -1.2 803,429 + Synpcc7942_0809 0.20 -2.5 803,448 + Synpcc7942_0809 0.22 -2.8 803,450 - Synpcc7942_0809 0.22 -2.2 803,483 + Synpcc7942_0809 0.24 -2.1 803,519 - Synpcc7942_0809 0.26 -3.4 803,519 - Synpcc7942_0809 0.26 -1.2 803,552 - Synpcc7942_0809 0.27 -3.1 803,569 - Synpcc7942_0809 0.28 -3.6 803,595 - Synpcc7942_0809 0.30 -1.5 803,595 - Synpcc7942_0809 0.30 -2.0 803,614 + Synpcc7942_0809 0.31 -0.2 803,621 - Synpcc7942_0809 0.31 -1.2 803,621 - Synpcc7942_0809 0.31 -2.4 803,633 - Synpcc7942_0809 0.32 -2.0 803,639 + Synpcc7942_0809 0.32 -0.7 803,677 - Synpcc7942_0809 0.35 -2.8 803,719 + Synpcc7942_0809 0.37 +1.4 803,731 + Synpcc7942_0809 0.38 -2.0 803,782 + Synpcc7942_0809 0.41 -2.2 803,792 - Synpcc7942_0809 0.41 -1.6 803,858 - Synpcc7942_0809 0.45 -1.8 803,858 - Synpcc7942_0809 0.45 +0.4 803,863 - Synpcc7942_0809 0.45 -1.4 803,880 - Synpcc7942_0809 0.46 -1.2
Or see this region's nucleotide sequence