Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt act and Synpcc7942_0705 overlap by 14 nucleotides Synpcc7942_0705 and cobL are separated by 6 nucleotides cobL and cad overlap by 20 nucleotides
Synpcc7942_0704: act - Chloramphenicol O-acetyltransferase, at 695,313 to 695,948
act
Synpcc7942_0705: Synpcc7942_0705 - hypothetical protein, at 695,935 to 696,570
_0705
Synpcc7942_0706: cobL - precorrin-6B methylase, at 696,577 to 697,191
cobL
Synpcc7942_0707: cad - arginine decarboxylase, at 697,172 to 698,641
cad
Position (kb) 696
697
698 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 695.835 kb on + strand, within act at 696.145 kb on + strand, within Synpcc7942_0705 at 696.164 kb on + strand, within Synpcc7942_0705 at 696.209 kb on - strand, within Synpcc7942_0705 at 696.213 kb on + strand, within Synpcc7942_0705 at 696.301 kb on - strand, within Synpcc7942_0705 at 696.371 kb on - strand, within Synpcc7942_0705 at 696.387 kb on + strand, within Synpcc7942_0705 at 696.397 kb on + strand, within Synpcc7942_0705 at 696.397 kb on + strand, within Synpcc7942_0705 at 696.403 kb on - strand, within Synpcc7942_0705 at 696.464 kb on + strand, within Synpcc7942_0705 at 696.464 kb on - strand, within Synpcc7942_0705 at 696.466 kb on + strand, within Synpcc7942_0705 at 696.474 kb on - strand, within Synpcc7942_0705 at 696.474 kb on - strand at 696.474 kb on - strand, within Synpcc7942_0705 at 696.719 kb on + strand, within cobL at 696.722 kb on + strand, within cobL at 696.722 kb on + strand, within cobL at 696.724 kb on + strand, within cobL at 696.748 kb on + strand, within cobL at 696.756 kb on - strand, within cobL at 696.756 kb on - strand, within cobL at 696.770 kb on + strand, within cobL at 696.799 kb on - strand, within cobL at 696.799 kb on - strand, within cobL at 696.837 kb on + strand, within cobL at 696.845 kb on - strand, within cobL at 696.866 kb on - strand, within cobL at 696.888 kb on - strand, within cobL at 696.896 kb on + strand, within cobL at 696.923 kb on - strand, within cobL at 696.926 kb on + strand, within cobL at 696.930 kb on + strand, within cobL at 696.955 kb on - strand, within cobL at 696.983 kb on + strand, within cobL at 696.983 kb on + strand, within cobL at 697.040 kb on + strand, within cobL at 697.040 kb on - strand, within cobL at 697.055 kb on - strand, within cobL at 697.135 kb on - strand at 697.144 kb on + strand at 697.154 kb on + strand at 697.159 kb on + strand at 697.162 kb on - strand at 697.162 kb on - strand at 697.178 kb on - strand at 697.180 kb on + strand at 697.180 kb on + strand at 697.183 kb on - strand at 697.187 kb on + strand at 697.188 kb on - strand at 697.198 kb on + strand at 697.205 kb on + strand at 697.205 kb on + strand at 697.213 kb on - strand at 697.226 kb on + strand at 697.349 kb on + strand at 697.395 kb on - strand, within cad at 697.432 kb on + strand, within cad at 697.500 kb on - strand, within cad at 697.502 kb on - strand, within cad at 697.517 kb on + strand, within cad at 697.519 kb on - strand, within cad at 697.529 kb on - strand, within cad at 697.583 kb on - strand, within cad at 697.678 kb on + strand, within cad at 697.720 kb on + strand, within cad at 697.744 kb on - strand, within cad at 697.828 kb on + strand, within cad at 697.878 kb on - strand, within cad at 697.909 kb on + strand, within cad at 697.914 kb on + strand, within cad at 697.922 kb on - strand, within cad at 697.945 kb on - strand, within cad at 698.042 kb on + strand, within cad at 698.124 kb on + strand, within cad
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 695,835 + act Synpcc7942_0704 0.82 -0.2 696,145 + Synpcc7942_0705 0.33 -1.9 696,164 + Synpcc7942_0705 0.36 +1.3 696,209 - Synpcc7942_0705 0.43 -1.9 696,213 + Synpcc7942_0705 0.44 +2.0 696,301 - Synpcc7942_0705 0.58 -1.9 696,371 - Synpcc7942_0705 0.69 +0.4 696,387 + Synpcc7942_0705 0.71 +2.1 696,397 + Synpcc7942_0705 0.73 -1.4 696,397 + Synpcc7942_0705 0.73 +0.8 696,403 - Synpcc7942_0705 0.74 +0.4 696,464 + Synpcc7942_0705 0.83 -2.4 696,464 - Synpcc7942_0705 0.83 -2.4 696,466 + Synpcc7942_0705 0.83 -0.8 696,474 - Synpcc7942_0705 0.85 +3.6 696,474 - +0.4 696,474 - Synpcc7942_0705 0.85 +2.1 696,719 + cobL Synpcc7942_0706 0.23 -0.6 696,722 + cobL Synpcc7942_0706 0.24 +0.4 696,722 + cobL Synpcc7942_0706 0.24 -3.3 696,724 + cobL Synpcc7942_0706 0.24 -1.6 696,748 + cobL Synpcc7942_0706 0.28 -1.9 696,756 - cobL Synpcc7942_0706 0.29 -1.9 696,756 - cobL Synpcc7942_0706 0.29 -0.3 696,770 + cobL Synpcc7942_0706 0.31 -2.6 696,799 - cobL Synpcc7942_0706 0.36 +1.2 696,799 - cobL Synpcc7942_0706 0.36 -1.6 696,837 + cobL Synpcc7942_0706 0.42 -3.6 696,845 - cobL Synpcc7942_0706 0.44 -1.6 696,866 - cobL Synpcc7942_0706 0.47 -4.3 696,888 - cobL Synpcc7942_0706 0.51 -1.2 696,896 + cobL Synpcc7942_0706 0.52 -4.0 696,923 - cobL Synpcc7942_0706 0.56 -2.0 696,926 + cobL Synpcc7942_0706 0.57 +1.4 696,930 + cobL Synpcc7942_0706 0.57 -2.2 696,955 - cobL Synpcc7942_0706 0.61 -1.8 696,983 + cobL Synpcc7942_0706 0.66 -1.2 696,983 + cobL Synpcc7942_0706 0.66 -1.1 697,040 + cobL Synpcc7942_0706 0.75 -3.7 697,040 - cobL Synpcc7942_0706 0.75 -0.6 697,055 - cobL Synpcc7942_0706 0.78 -6.0 697,135 - -0.6 697,144 + -1.2 697,154 + -3.5 697,159 + -0.2 697,162 - -0.6 697,162 - +0.6 697,178 - -3.0 697,180 + +0.2 697,180 + -0.9 697,183 - -2.2 697,187 + +1.3 697,188 - -1.0 697,198 + -0.2 697,205 + -0.4 697,205 + -1.2 697,213 - -2.8 697,226 + -1.2 697,349 + +0.4 697,395 - cad Synpcc7942_0707 0.15 -4.0 697,432 + cad Synpcc7942_0707 0.18 -1.2 697,500 - cad Synpcc7942_0707 0.22 -1.6 697,502 - cad Synpcc7942_0707 0.22 +0.4 697,517 + cad Synpcc7942_0707 0.23 -1.2 697,519 - cad Synpcc7942_0707 0.24 -4.0 697,529 - cad Synpcc7942_0707 0.24 -1.3 697,583 - cad Synpcc7942_0707 0.28 -1.2 697,678 + cad Synpcc7942_0707 0.34 -2.2 697,720 + cad Synpcc7942_0707 0.37 -3.7 697,744 - cad Synpcc7942_0707 0.39 -1.2 697,828 + cad Synpcc7942_0707 0.45 -3.3 697,878 - cad Synpcc7942_0707 0.48 -3.3 697,909 + cad Synpcc7942_0707 0.50 -1.9 697,914 + cad Synpcc7942_0707 0.50 -1.9 697,922 - cad Synpcc7942_0707 0.51 +0.0 697,945 - cad Synpcc7942_0707 0.53 -3.0 698,042 + cad Synpcc7942_0707 0.59 -1.2 698,124 + cad Synpcc7942_0707 0.65 -1.9
Or see this region's nucleotide sequence