Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0700 and Synpcc7942_0701 are separated by 54 nucleotides Synpcc7942_0701 and Synpcc7942_0702 overlap by 4 nucleotides Synpcc7942_0702 and smf are separated by 26 nucleotides
Synpcc7942_0700: Synpcc7942_0700 - hypothetical protein, at 691,824 to 692,744
_0700
Synpcc7942_0701: Synpcc7942_0701 - hypothetical protein, at 692,799 to 693,260
_0701
Synpcc7942_0702: Synpcc7942_0702 - hypothetical protein, at 693,257 to 694,045
_0702
Synpcc7942_0703: smf - DNA processing protein DprA, putative, at 694,072 to 695,280
smf
Position (kb) 692
693
694 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 691.829 kb on - strand at 691.847 kb on + strand at 691.847 kb on - strand at 691.847 kb on - strand at 691.883 kb on + strand at 691.920 kb on + strand, within Synpcc7942_0700 at 691.990 kb on + strand, within Synpcc7942_0700 at 692.006 kb on - strand, within Synpcc7942_0700 at 692.065 kb on + strand, within Synpcc7942_0700 at 692.192 kb on - strand, within Synpcc7942_0700 at 692.193 kb on + strand, within Synpcc7942_0700 at 692.193 kb on + strand, within Synpcc7942_0700 at 692.193 kb on + strand, within Synpcc7942_0700 at 692.203 kb on + strand, within Synpcc7942_0700 at 692.203 kb on + strand, within Synpcc7942_0700 at 692.233 kb on - strand, within Synpcc7942_0700 at 692.243 kb on - strand, within Synpcc7942_0700 at 692.256 kb on - strand, within Synpcc7942_0700 at 692.273 kb on + strand, within Synpcc7942_0700 at 692.291 kb on + strand, within Synpcc7942_0700 at 692.300 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.347 kb on - strand, within Synpcc7942_0700 at 692.357 kb on - strand, within Synpcc7942_0700 at 692.374 kb on + strand, within Synpcc7942_0700 at 692.429 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.437 kb on - strand, within Synpcc7942_0700 at 692.486 kb on - strand, within Synpcc7942_0700 at 692.535 kb on + strand, within Synpcc7942_0700 at 692.664 kb on + strand at 692.664 kb on - strand at 692.691 kb on - strand at 692.693 kb on + strand at 692.696 kb on - strand at 692.698 kb on + strand at 692.714 kb on + strand at 692.724 kb on + strand at 692.732 kb on - strand at 692.732 kb on - strand at 692.732 kb on - strand at 692.732 kb on - strand at 692.773 kb on + strand at 692.783 kb on + strand at 692.791 kb on - strand at 692.801 kb on - strand at 692.824 kb on + strand at 692.858 kb on + strand, within Synpcc7942_0701 at 692.881 kb on + strand, within Synpcc7942_0701 at 692.930 kb on - strand, within Synpcc7942_0701 at 692.933 kb on + strand, within Synpcc7942_0701 at 693.007 kb on + strand, within Synpcc7942_0701 at 693.015 kb on - strand, within Synpcc7942_0701 at 693.037 kb on + strand, within Synpcc7942_0701 at 693.037 kb on + strand, within Synpcc7942_0701 at 693.041 kb on + strand, within Synpcc7942_0701 at 693.045 kb on - strand, within Synpcc7942_0701 at 693.046 kb on + strand, within Synpcc7942_0701 at 693.047 kb on + strand, within Synpcc7942_0701 at 693.051 kb on + strand, within Synpcc7942_0701 at 693.051 kb on + strand, within Synpcc7942_0701 at 693.059 kb on - strand, within Synpcc7942_0701 at 693.075 kb on - strand, within Synpcc7942_0701 at 693.085 kb on - strand, within Synpcc7942_0701 at 693.085 kb on - strand, within Synpcc7942_0701 at 693.095 kb on + strand, within Synpcc7942_0701 at 693.095 kb on + strand, within Synpcc7942_0701 at 693.103 kb on - strand, within Synpcc7942_0701 at 693.149 kb on + strand, within Synpcc7942_0701 at 693.199 kb on + strand, within Synpcc7942_0701 at 693.207 kb on + strand, within Synpcc7942_0701 at 693.207 kb on + strand, within Synpcc7942_0701 at 693.207 kb on + strand, within Synpcc7942_0701 at 693.230 kb on + strand at 693.230 kb on + strand at 693.230 kb on + strand at 693.230 kb on + strand at 693.230 kb on + strand at 693.230 kb on + strand at 693.230 kb on + strand at 693.238 kb on - strand at 693.240 kb on + strand at 693.240 kb on + strand at 693.240 kb on + strand at 693.240 kb on + strand at 693.240 kb on + strand at 693.240 kb on + strand at 693.245 kb on + strand at 693.245 kb on + strand at 693.245 kb on + strand at 693.248 kb on - strand at 693.248 kb on - strand at 693.250 kb on + strand at 693.296 kb on + strand at 693.300 kb on + strand at 693.306 kb on - strand at 693.328 kb on + strand at 693.500 kb on - strand, within Synpcc7942_0702 at 693.544 kb on + strand, within Synpcc7942_0702 at 693.567 kb on - strand, within Synpcc7942_0702 at 693.578 kb on - strand, within Synpcc7942_0702 at 693.587 kb on - strand, within Synpcc7942_0702 at 693.625 kb on + strand, within Synpcc7942_0702 at 693.627 kb on - strand, within Synpcc7942_0702 at 693.628 kb on - strand, within Synpcc7942_0702 at 693.632 kb on - strand, within Synpcc7942_0702 at 693.691 kb on + strand, within Synpcc7942_0702 at 693.691 kb on + strand, within Synpcc7942_0702 at 693.699 kb on - strand, within Synpcc7942_0702 at 693.703 kb on + strand, within Synpcc7942_0702 at 693.711 kb on - strand, within Synpcc7942_0702 at 693.711 kb on - strand, within Synpcc7942_0702 at 693.728 kb on + strand, within Synpcc7942_0702 at 693.748 kb on - strand, within Synpcc7942_0702 at 693.772 kb on + strand, within Synpcc7942_0702 at 693.775 kb on - strand, within Synpcc7942_0702 at 693.775 kb on - strand, within Synpcc7942_0702 at 693.780 kb on - strand, within Synpcc7942_0702 at 693.790 kb on - strand, within Synpcc7942_0702 at 693.791 kb on - strand, within Synpcc7942_0702 at 693.805 kb on - strand, within Synpcc7942_0702 at 693.857 kb on + strand, within Synpcc7942_0702 at 693.862 kb on + strand, within Synpcc7942_0702 at 693.862 kb on + strand, within Synpcc7942_0702 at 693.870 kb on - strand, within Synpcc7942_0702 at 693.870 kb on - strand, within Synpcc7942_0702 at 693.895 kb on + strand, within Synpcc7942_0702 at 693.895 kb on + strand, within Synpcc7942_0702 at 693.895 kb on + strand, within Synpcc7942_0702 at 693.898 kb on - strand, within Synpcc7942_0702 at 693.934 kb on + strand, within Synpcc7942_0702 at 693.942 kb on - strand, within Synpcc7942_0702 at 693.942 kb on - strand, within Synpcc7942_0702 at 693.975 kb on - strand at 693.978 kb on + strand at 693.983 kb on - strand at 693.983 kb on - strand at 693.988 kb on - strand at 693.996 kb on - strand at 693.996 kb on - strand at 694.006 kb on - strand at 694.029 kb on - strand at 694.047 kb on - strand at 694.069 kb on + strand at 694.075 kb on + strand at 694.077 kb on - strand at 694.080 kb on + strand at 694.128 kb on + strand at 694.134 kb on + strand at 694.139 kb on + strand at 694.141 kb on - strand at 694.147 kb on - strand at 694.153 kb on + strand at 694.158 kb on + strand at 694.163 kb on + strand at 694.163 kb on - strand at 694.166 kb on - strand at 694.171 kb on - strand at 694.195 kb on - strand, within smf at 694.200 kb on - strand, within smf at 694.206 kb on - strand, within smf at 694.216 kb on + strand, within smf at 694.243 kb on + strand, within smf at 694.246 kb on - strand, within smf at 694.259 kb on + strand, within smf at 694.260 kb on - strand, within smf
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 691,829 - +0.4 691,847 + -0.7 691,847 - -1.2 691,847 - -0.7 691,883 + -0.6 691,920 + Synpcc7942_0700 0.10 -1.4 691,990 + Synpcc7942_0700 0.18 +0.4 692,006 - Synpcc7942_0700 0.20 -1.1 692,065 + Synpcc7942_0700 0.26 +0.2 692,192 - Synpcc7942_0700 0.40 -0.0 692,193 + Synpcc7942_0700 0.40 -1.6 692,193 + Synpcc7942_0700 0.40 -0.3 692,193 + Synpcc7942_0700 0.40 +0.4 692,203 + Synpcc7942_0700 0.41 -0.6 692,203 + Synpcc7942_0700 0.41 +0.0 692,233 - Synpcc7942_0700 0.44 -3.0 692,243 - Synpcc7942_0700 0.45 -1.6 692,256 - Synpcc7942_0700 0.47 -1.6 692,273 + Synpcc7942_0700 0.49 -2.2 692,291 + Synpcc7942_0700 0.51 -1.4 692,300 + Synpcc7942_0700 0.52 -0.9 692,339 + Synpcc7942_0700 0.56 +0.3 692,339 + Synpcc7942_0700 0.56 -0.2 692,339 + Synpcc7942_0700 0.56 -0.2 692,339 + Synpcc7942_0700 0.56 -2.4 692,347 - Synpcc7942_0700 0.57 -0.2 692,357 - Synpcc7942_0700 0.58 -1.2 692,374 + Synpcc7942_0700 0.60 +0.4 692,429 + Synpcc7942_0700 0.66 -1.8 692,434 + Synpcc7942_0700 0.66 -0.5 692,434 + Synpcc7942_0700 0.66 +0.2 692,434 + Synpcc7942_0700 0.66 -1.6 692,434 + Synpcc7942_0700 0.66 -0.9 692,434 + Synpcc7942_0700 0.66 +0.8 692,437 - Synpcc7942_0700 0.67 +0.6 692,486 - Synpcc7942_0700 0.72 +1.4 692,535 + Synpcc7942_0700 0.77 +1.6 692,664 + +1.9 692,664 - +0.1 692,691 - +0.8 692,693 + -2.2 692,696 - +0.4 692,698 + +0.0 692,714 + -2.4 692,724 + +1.4 692,732 - -0.5 692,732 - -0.6 692,732 - -0.3 692,732 - -4.0 692,773 + -0.1 692,783 + +3.4 692,791 - +0.5 692,801 - +0.8 692,824 + -0.8 692,858 + Synpcc7942_0701 0.13 +0.7 692,881 + Synpcc7942_0701 0.18 +0.4 692,930 - Synpcc7942_0701 0.28 -1.0 692,933 + Synpcc7942_0701 0.29 -0.7 693,007 + Synpcc7942_0701 0.45 -3.2 693,015 - Synpcc7942_0701 0.47 -0.6 693,037 + Synpcc7942_0701 0.52 +1.1 693,037 + Synpcc7942_0701 0.52 -0.9 693,041 + Synpcc7942_0701 0.52 +1.4 693,045 - Synpcc7942_0701 0.53 -2.9 693,046 + Synpcc7942_0701 0.53 -2.4 693,047 + Synpcc7942_0701 0.54 -1.6 693,051 + Synpcc7942_0701 0.55 -0.4 693,051 + Synpcc7942_0701 0.55 -0.2 693,059 - Synpcc7942_0701 0.56 -1.7 693,075 - Synpcc7942_0701 0.60 +0.0 693,085 - Synpcc7942_0701 0.62 +1.4 693,085 - Synpcc7942_0701 0.62 +0.4 693,095 + Synpcc7942_0701 0.64 -0.2 693,095 + Synpcc7942_0701 0.64 -0.6 693,103 - Synpcc7942_0701 0.66 +0.4 693,149 + Synpcc7942_0701 0.76 +0.2 693,199 + Synpcc7942_0701 0.87 +1.0 693,207 + Synpcc7942_0701 0.88 -1.6 693,207 + Synpcc7942_0701 0.88 -1.2 693,207 + Synpcc7942_0701 0.88 -2.4 693,230 + -1.0 693,230 + +0.4 693,230 + +1.2 693,230 + +1.4 693,230 + -0.2 693,230 + +1.7 693,230 + -1.6 693,238 - -1.0 693,240 + -0.4 693,240 + -0.3 693,240 + +0.2 693,240 + +2.4 693,240 + -0.2 693,240 + +0.3 693,245 + +0.2 693,245 + +2.2 693,245 + -1.2 693,248 - -2.4 693,248 - -1.9 693,250 + -1.6 693,296 + +0.7 693,300 + +0.2 693,306 - -0.6 693,328 + +0.5 693,500 - Synpcc7942_0702 0.31 +1.7 693,544 + Synpcc7942_0702 0.36 -2.6 693,567 - Synpcc7942_0702 0.39 +1.2 693,578 - Synpcc7942_0702 0.41 +0.7 693,587 - Synpcc7942_0702 0.42 -0.4 693,625 + Synpcc7942_0702 0.47 +1.8 693,627 - Synpcc7942_0702 0.47 +1.3 693,628 - Synpcc7942_0702 0.47 -3.0 693,632 - Synpcc7942_0702 0.48 -1.2 693,691 + Synpcc7942_0702 0.55 +0.4 693,691 + Synpcc7942_0702 0.55 +0.8 693,699 - Synpcc7942_0702 0.56 -1.0 693,703 + Synpcc7942_0702 0.57 +2.0 693,711 - Synpcc7942_0702 0.58 +2.3 693,711 - Synpcc7942_0702 0.58 -0.6 693,728 + Synpcc7942_0702 0.60 +0.8 693,748 - Synpcc7942_0702 0.62 +1.4 693,772 + Synpcc7942_0702 0.65 +1.2 693,775 - Synpcc7942_0702 0.66 +0.4 693,775 - Synpcc7942_0702 0.66 -0.6 693,780 - Synpcc7942_0702 0.66 -0.3 693,790 - Synpcc7942_0702 0.68 -2.5 693,791 - Synpcc7942_0702 0.68 +1.7 693,805 - Synpcc7942_0702 0.69 +1.5 693,857 + Synpcc7942_0702 0.76 -1.2 693,862 + Synpcc7942_0702 0.77 +1.1 693,862 + Synpcc7942_0702 0.77 -1.2 693,870 - Synpcc7942_0702 0.78 +0.8 693,870 - Synpcc7942_0702 0.78 -0.3 693,895 + Synpcc7942_0702 0.81 -0.6 693,895 + Synpcc7942_0702 0.81 -2.2 693,895 + Synpcc7942_0702 0.81 +2.7 693,898 - Synpcc7942_0702 0.81 +1.6 693,934 + Synpcc7942_0702 0.86 +2.7 693,942 - Synpcc7942_0702 0.87 -0.5 693,942 - Synpcc7942_0702 0.87 -0.7 693,975 - +0.4 693,978 + +1.4 693,983 - +0.7 693,983 - -0.4 693,988 - +1.9 693,996 - -0.8 693,996 - -2.2 694,006 - +1.1 694,029 - -0.6 694,047 - -0.3 694,069 + +1.0 694,075 + +1.6 694,077 - +1.5 694,080 + -1.4 694,128 + -1.2 694,134 + -0.3 694,139 + +0.4 694,141 - -2.9 694,147 - -3.0 694,153 + -0.2 694,158 + -0.7 694,163 + +1.4 694,163 - -0.3 694,166 - +1.7 694,171 - -0.9 694,195 - smf Synpcc7942_0703 0.10 -1.6 694,200 - smf Synpcc7942_0703 0.11 +0.5 694,206 - smf Synpcc7942_0703 0.11 -0.6 694,216 + smf Synpcc7942_0703 0.12 +2.0 694,243 + smf Synpcc7942_0703 0.14 +0.4 694,246 - smf Synpcc7942_0703 0.14 +0.7 694,259 + smf Synpcc7942_0703 0.15 -1.2 694,260 - smf Synpcc7942_0703 0.16 -2.9
Or see this region's nucleotide sequence